semi-fix the inline_cwl when using stock CLT names with REST API

src/sophios/api/http/restapi.py

@@ -130,9 +130,14 @@ async def compile_wf(request: Request) -> Json:
     compiler_info: CompilerInfo = compiler.compile_workflow(yaml_tree, args, [], [graph], {}, {}, {}, {},
                                                             tools_cwl, True, relative_run_path=True, testing=False)
 
+    rose_tree = compiler_info.rose
+    if args.inline_cwl_runtag:
+        print(yaml.dump(rose_tree))
+        input_output.write_to_disk(rose_tree, Path('autogenerated/'), True, args.inputs_file)
+        rose_tree = plugins.cwl_update_inline_runtag_rosetree(rose_tree, Path('autogenerated/'), True)
     # ======== OUTPUT PROCESSING ================
     # ========= PROCESS COMPILED OBJECT =========
-    sub_node_data: NodeData = compiler_info.rose.data
+    sub_node_data: NodeData = rose_tree.data
     yaml_stem = sub_node_data.name
     cwl_tree = sub_node_data.compiled_cwl
     yaml_inputs = sub_node_data.workflow_inputs_file

tests/test_rest_core.py

@@ -144,7 +144,7 @@ async def receive() -> Json:
 
 
 @pytest.mark.fast
-def test_rest_core_multi_node() -> None:
+def test_rest_core_multi_node_file() -> None:
     """A simple multi node sophios/restapi test"""
     inp_file = "multi_node.json"
     inp: Json = {}