-
Notifications
You must be signed in to change notification settings - Fork 16
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
one step wfb, cwl dict format and uuid (#292)
Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
- Loading branch information
1 parent
9797013
commit 61abb94
Showing
6 changed files
with
240 additions
and
48 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,85 @@ | ||
| { | ||
| "state": { | ||
| "nodes": [ | ||
| { | ||
| "id": 1, | ||
| "x": 259, | ||
| "y": 209, | ||
| "z": 1, | ||
| "name": "BBBC Download", | ||
| "expanded": true, | ||
| "pluginId": "polusai/bbbc-download-plugin@0.1.0-dev1", | ||
| "height": 50, | ||
| "width": 250, | ||
| "settings": { | ||
| "inputs": { | ||
| "name": "BBBC001", | ||
| "outDir": "bbbcdownload.outDir" | ||
| } | ||
| }, | ||
| "internal": false | ||
| } | ||
| ], | ||
| "links": [], | ||
| "selection": [] | ||
| }, | ||
| "plugins": [ | ||
| { | ||
| "name": "polusai/bbbc-download-plugin:0.1.0-dev1", | ||
| "version": "0.1.0-dev1", | ||
| "title": "BBBC Download", | ||
| "description": "Downloads the datasets on the Broad Bioimage Benchmark Collection website", | ||
| "createdBy": "Serebryakov, Artem (NIH/NCATS) [C]", | ||
| "updatedBy": "Serebryakov, Artem (NIH/NCATS) [C]", | ||
| "author": [ | ||
| "Hamdah Abbasi" | ||
| ], | ||
| "contact": "hamdahshafqat.abbasi@nih.gov", | ||
| "container": "polusai/bbbc-download-plugin:0.1.0-dev1", | ||
| "entrypoint": "", | ||
| "inputs": [ | ||
| { | ||
| "description": "The name of the dataset(s) to be downloaded (separate the datasets with a comma. eg BBBC001,BBBC002,BBBC003)", | ||
| "format": [ | ||
| "collection" | ||
| ], | ||
| "name": "name", | ||
| "required": true, | ||
| "type": "string" | ||
| } | ||
| ], | ||
| "outputs": [ | ||
| { | ||
| "description": "Output collection", | ||
| "name": "outDir", | ||
| "format": [ | ||
| "directory" | ||
| ], | ||
| "required": true, | ||
| "type": "path" | ||
| } | ||
| ], | ||
| "repository": "https://github.com/LabShare/polus-plugins", | ||
| "specVersion": "1.0.0", | ||
| "ui": [ | ||
| { | ||
| "description": "The name of the dataset(s) to be downloaded (separate the datasets with a comma. eg BBBC001,BBBC002,BBBC003)", | ||
| "format": [ | ||
| "collection" | ||
| ], | ||
| "name": "name", | ||
| "required": true, | ||
| "type": "string" | ||
| } | ||
| ], | ||
| "path": "visualization", | ||
| "tags": [ | ||
| "bbbc-download" | ||
| ], | ||
| "createdAt": "2024-10-29T18:59:55.843Z", | ||
| "updatedAt": "2024-10-29T20:01:42.463Z", | ||
| "id": "672130abad801ccee7f5eaad", | ||
| "pid": "polusai/bbbc-download-plugin@0.1.0-dev1" | ||
| } | ||
| ] | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,74 @@ | ||
| { | ||
| "state": { | ||
| "nodes": [ | ||
| { | ||
| "id": 1, | ||
| "name": "bbbcdownload", | ||
| "pluginId": "", | ||
| "run": { | ||
| "baseCommand": [], | ||
| "class": "CommandLineTool", | ||
| "cwlVersion": "v1.2", | ||
| "inputs": { | ||
| "name": { | ||
| "label": "The name of the dataset(s) to be downloaded (separate the datasets with a comma. eg BBBC001,BBBC002,BBBC003)", | ||
| "doc": "The name of the dataset(s) to be downloaded (separate the datasets with a comma. eg BBBC001,BBBC002,BBBC003)", | ||
| "inputBinding": { | ||
| "prefix": "--name" | ||
| }, | ||
| "type": "string" | ||
| }, | ||
| "outDir": { | ||
| "label": "Output collection", | ||
| "doc": "Output collection", | ||
| "inputBinding": { | ||
| "prefix": "--outDir" | ||
| }, | ||
| "type": "Directory" | ||
| } | ||
| }, | ||
| "outputs": { | ||
| "outDir": { | ||
| "label": "Output collection", | ||
| "doc": "Output collection", | ||
| "type": "Directory", | ||
| "outputBinding": { | ||
| "glob": "$(inputs.outDir.basename)" | ||
| } | ||
| } | ||
| }, | ||
| "stdout": "output", | ||
| "requirements": { | ||
| "DockerRequirement": { | ||
| "dockerPull": "polusai/bbbc-download-plugin:0.1.0-dev1" | ||
| }, | ||
| "InitialWorkDirRequirement": { | ||
| "listing": [ | ||
| { | ||
| "entry": "$(inputs.outDir)", | ||
| "writable": true | ||
| } | ||
| ] | ||
| }, | ||
| "InlineJavascriptRequirement": {}, | ||
| "NetworkAccess": { | ||
| "networkAccess": true | ||
| } | ||
| } | ||
| }, | ||
| "settings": { | ||
| "inputs": { | ||
| "name": "BBBC001", | ||
| "outDir": "bbbcdownload.outDir" | ||
| }, | ||
| "outputs": { | ||
| "outDir": "bbbcdownload.outDir" | ||
| } | ||
| }, | ||
| "internal": false | ||
| } | ||
| ], | ||
| "links": [] | ||
| }, | ||
| "plugins": [] | ||
| } |
Oops, something went wrong.