Merge pull request #238 from sameeul/release_v0.0.1

Release v0.0.1

.github/workflows/test_and_publish_pypi.yml

@@ -30,12 +30,19 @@ jobs:
       - name: Build sophios
         run: |
           python -m pip install twine build
+          python -m build --wheel
+          python -m build --sdist
+    
+      - name: Upload Artifact
+        uses: actions/upload-artifact@v3
+        with:
+            name: sophios-wheels
+            path: dist/*
+            retention-days: 1
 
       - name: Publish to PyPi
         env:
           TWINE_USERNAME: __token__
           TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
         run: |
-          python -m build --wheel
-          python -m build --sdist
           twine upload dist/*

pyproject.toml

@@ -102,11 +102,7 @@ runners = [
     "toil[cwl]",
     "cwl-utils",
 ]
-runners-src = [
-    "toil[cwl] @ git+https://github.com/jfennick/toil.git",
-    "cwltool @ git+https://github.com/jfennick/cwltool.git",
-    "cwl-utils @ git+https://github.com/jfennick/cwl-utils.git",
-]
+
 # See docs/requirements.txt
 doc = [
     "sphinx",
@@ -116,7 +112,6 @@ doc = [
 plots = ["matplotlib"]
 cyto = ["ipycytoscape"] # only for DAG visualization
 all_except_runner_src = ["sophios[test,doc,plots,cyto,mypy-types]"]
-all = ["sophios[test,doc,plots,cyto,runners-src,mypy-types]"]
 
 [project.scripts]
 sophios = "sophios.main:main"