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Plant-Food-Research-Open

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  1. assemblyqc assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Nextflow 37 8

  2. genepal genepal Public

    A Nextflow pipeline for genome and pan-genome annotation

    Nextflow 15 7

  3. calisim calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Python 15 2

  4. moiraine moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    R 8 3

  5. TEgenomeSimulator TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    HTML 4 2

  6. FieldNBalance FieldNBalance Public

    Nitrogen balance model components and test procedures

    Jupyter Notebook 2 4

Repositories

Showing 10 of 13 repositories
  • r-pipeline-development-workshop Public

    Workshop on pipeline development and model deployment onto Kubernetes via Docker using R.

    Plant-Food-Research-Open/r-pipeline-development-workshop’s past year of commit activity
    HTML 2 Apache-2.0 1 2 (1 issue needs help) 10 Updated Sep 30, 2025
  • calisim-examples-workshop-material Public

    Workshop for calisim: A toolbox for the calibration and evaluation of simulation models.

    Plant-Food-Research-Open/calisim-examples-workshop-material’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 1 4 (2 issues need help) 10 Updated Sep 30, 2025
  • moiraine_publication_code Public

    Code to reproduce the results presented in Angelin-Bonnet et al, 2025 "moiraine: an R package to construct reproducible pipelines for the application and comparison of multi-omics integration methods".

    Plant-Food-Research-Open/moiraine_publication_code’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 26, 2025
  • assemblyqc Public

    A Nextflow pipeline for evaluating assembly quality

    Plant-Food-Research-Open/assemblyqc’s past year of commit activity
    Nextflow 37 MIT 8 18 (1 issue needs help) 0 Updated Sep 23, 2025
  • moiraine Public

    An R package to construct Multi-Omics Integration Reproducible Analyses in R.

    Plant-Food-Research-Open/moiraine’s past year of commit activity
    R 8 3 1 0 Updated Sep 22, 2025
  • TEgenomeSimulator Public

    TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.

    Plant-Food-Research-Open/TEgenomeSimulator’s past year of commit activity
    HTML 4 GPL-3.0 2 2 1 Updated Sep 10, 2025
  • calisim Public

    A toolbox for the calibration and evaluation of simulation models.

    Plant-Food-Research-Open/calisim’s past year of commit activity
    Python 15 Apache-2.0 2 9 (1 issue needs help) 5 Updated Sep 1, 2025
  • FieldNBalance Public

    Nitrogen balance model components and test procedures

    Plant-Food-Research-Open/FieldNBalance’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 4 2 (1 issue needs help) 0 Updated Aug 22, 2025
  • Australian_TeaTree_Genomes Public

    Australian Tea Tree Genome

    Plant-Food-Research-Open/Australian_TeaTree_Genomes’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jul 24, 2025
  • pfram Public
    Plant-Food-Research-Open/pfram’s past year of commit activity
    R 1 Apache-2.0 0 14 (14 issues need help) 0 Updated Jul 10, 2025
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