TreeKnit is a Julia package that performs the inference of Ancestral Reassortment Graph for segmented genomes (typically, human influenza). Documentation is available here.
The complete description of the algorithm is available at
TreeKnit: Inferring Ancestral Reassortment Graphs of influenza viruses
Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher bioRxiv 2021.12.20.473456; doi: https://doi.org/10.1101/2021.12.20.473456
Please cite this article if you use TreeKnit!
