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@PennTURBO

PennTURBO

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  1. turbo-ontology turbo-ontology Public

    Hosts the TURBO Ontology and supporting files.

    Makefile 4

  2. semantic-engine semantic-engine Public

    TURBO semantic engine (Drivetrain). Transforms source-dependent RDF data into a source-independent, semantically rich RDF model.

    Scala 6

  3. knowledgegraph-api knowledgegraph-api Public

    Application that provides a rest API to communicate with the resources produced by the knowledgegraph pipelines.

    Scala 1

Repositories

Showing 10 of 14 repositories
  • ETL-CDMBuilder Public Forked from OHDSI/ETL-CDMBuilder

    ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases

    PennTURBO/ETL-CDMBuilder’s past year of commit activity
    C# 0 Apache-2.0 33 0 0 Updated Jan 15, 2025
  • disease-diagnosis-knowledgegraph-pipeline Public

    Pipeline to generate an RDF knowledgegraph that links MonDO disease classes to ICD code terms.

    PennTURBO/disease-diagnosis-knowledgegraph-pipeline’s past year of commit activity
    R 0 2 3 0 Updated Aug 4, 2023
  • Turbo-Documentation Public

    Hosts the Github Pages site documenting the UPenn Biobank TURBO project

    PennTURBO/Turbo-Documentation’s past year of commit activity
    R 9 2 2 0 Updated Aug 3, 2023
  • turbo-ontology Public

    Hosts the TURBO Ontology and supporting files.

    PennTURBO/turbo-ontology’s past year of commit activity
    Makefile 4 0 11 0 Updated Nov 10, 2022
  • medication-knowledgegraph-pipeline Public

    Pipeline that maps strings describing medication orders to RxNorm terms, and generates an RDF knowledgegraph that links those strings to multiple ontologies including DrOn, ChEBI, ATC and NDF-RT.

    PennTURBO/medication-knowledgegraph-pipeline’s past year of commit activity
    R 4 1 23 0 Updated May 7, 2021
  • turbo-globals Public

    Currently includes some gists used by R code in multiple TURBO repos

    PennTURBO/turbo-globals’s past year of commit activity
    R 0 0 0 0 Updated Mar 3, 2021
  • knowledgegraph-api Public

    Application that provides a rest API to communicate with the resources produced by the knowledgegraph pipelines.

    PennTURBO/knowledgegraph-api’s past year of commit activity
    Scala 1 0 3 0 Updated Feb 22, 2021
  • turbo-assay-templating Public

    Here's a first step in modelling assays* with OBO* terms. It generates a template that can be executed by the ROBOT* application, leading to an RDF data model. Assays currently in scope have a specimen collected from an organism as the evaluant and can be used in EHR 2ry research or in vivo basic research. We currently bootstrapping the models f…

    PennTURBO/turbo-assay-templating’s past year of commit activity
    R 1 0 6 0 Updated Dec 15, 2020
  • semantic-engine Public

    TURBO semantic engine (Drivetrain). Transforms source-dependent RDF data into a source-independent, semantically rich RDF model.

    PennTURBO/semantic-engine’s past year of commit activity
    Scala 6 0 28 0 Updated Sep 2, 2020
  • rdf-to-neo4j Public

    Utility application to transform RDF triples into a neo4j property graph.

    PennTURBO/rdf-to-neo4j’s past year of commit activity
    Scala 0 0 0 0 Updated Aug 6, 2020
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