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Merge pull request #456 from PennLINC/zizuhead
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add  Ritchey MTL atlas
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@a3sha2
a3sha2 authored Jun 29, 2021
2 parents 8f68f1b + d4064f8 commit 1dde99d
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9 changes: 9 additions & 0 deletions atlas/RitcheyMTL/RitcheyMTL.bib
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@article{ritchey2015delay,
title={Delay-dependent contributions of medial temporal lobe regions to episodic memory retrieval},
author={Ritchey, Maureen and Montchal, Maria E and Yonelinas, Andrew P and Ranganath, Charan},
journal={Elife},
volume={4},
pages={e05025},
year={2015},
publisher={eLife Sciences Publications Limited}
}
Binary file added atlas/RitcheyMTL/RitcheyMTLMNI.nii.gz
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11 changes: 11 additions & 0 deletions atlas/RitcheyMTL/RitcheyMTLNodeIndex.1D
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11 changes: 11 additions & 0 deletions atlas/RitcheyMTL/RitcheyMTLNodeNames.txt
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PRC_L
PRC_R
PHC_L
PHC_R
HIPP_HEAD_L
HIPP_HEAD_R
HIPP_BODY_L
HIPP_BODY_R
HIPP_TAIL_L
HIPP_TAIL_R

8 changes: 8 additions & 0 deletions space/MNI/MNI_atlas.json
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Expand Up @@ -170,5 +170,13 @@
"Space": "MNI",
"SpaceNative": "MNI",
"Type": "Map"
},
"RitcheyMTL": {
"Map": "${BRAINATLAS}/RitcheyMTL/RitcheyMTLMNI.nii.gz",
"NodeIndex": "${BRAINATLAS}/RitcheyMTL/RitcheyMTLNodeIndex.1D",
"NodeNames": "${BRAINATLAS}/RitcheyMTL/RitcheyMTLNodeNames.txt",
"Space": "MNI",
"SpaceNative": "MNI",
"Type": "Map"
}
}
10 changes: 10 additions & 0 deletions testing/mnifc24pgsr_outputs.txt
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Expand Up @@ -47,6 +47,10 @@ sub-1/fcon/power264/sub-1_power264_missing.txt
sub-1/fcon/power264/sub-1_power264.net
sub-1/fcon/power264/sub-1_power264_network.txt
sub-1/fcon/power264/sub-1_power264_ts.1D
sub-1/fcon/RitcheyMTL
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL.net
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL_network.txt
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL_ts.1D
sub-1/fcon/schaefer100x17
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17.net
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17_network.txt
Expand Down Expand Up @@ -155,6 +159,11 @@ sub-1/roiquant/power264/sub-1_power264_mean_alff.csv
sub-1/roiquant/power264/sub-1_power264_mean_alffZ.csv
sub-1/roiquant/power264/sub-1_power264_mean_reho.csv
sub-1/roiquant/power264/sub-1_power264_mean_rehoZ.csv
sub-1/roiquant/RitcheyMTL
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_alff.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_alffZ.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_reho.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_rehoZ.csv
sub-1/roiquant/schaefer100x17
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alff.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alffZ.csv
Expand Down Expand Up @@ -198,6 +207,7 @@ sub-1/sub-1_atlas/sub-1_global.nii.gz
sub-1/sub-1_atlas/sub-1_gordon333.nii.gz
sub-1/sub-1_atlas/sub-1_HarvardOxford.nii.gz
sub-1/sub-1_atlas/sub-1_power264.nii.gz
sub-1/sub-1_atlas/sub-1_RitcheyMTL.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer100x17.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer100x7.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer200x17.nii.gz
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10 changes: 10 additions & 0 deletions testing/t1fc36p_outputs.txt
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Expand Up @@ -49,6 +49,10 @@ sub-1/fcon/power264/sub-1_power264_missing.txt
sub-1/fcon/power264/sub-1_power264.net
sub-1/fcon/power264/sub-1_power264_network.txt
sub-1/fcon/power264/sub-1_power264_ts.1D
sub-1/fcon/RitcheyMTL
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL.net
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL_network.txt
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL_ts.1D
sub-1/fcon/schaefer100x17
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17.net
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17_network.txt
Expand Down Expand Up @@ -157,6 +161,11 @@ sub-1/roiquant/power264/sub-1_power264_mean_alff.csv
sub-1/roiquant/power264/sub-1_power264_mean_alffZ.csv
sub-1/roiquant/power264/sub-1_power264_mean_reho.csv
sub-1/roiquant/power264/sub-1_power264_mean_rehoZ.csv
sub-1/roiquant/RitcheyMTL
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_alff.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_alffZ.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_reho.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_rehoZ.csv
sub-1/roiquant/schaefer100x17
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alff.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alffZ.csv
Expand Down Expand Up @@ -200,6 +209,7 @@ sub-1/sub-1_atlas/sub-1_global.nii.gz
sub-1/sub-1_atlas/sub-1_gordon333.nii.gz
sub-1/sub-1_atlas/sub-1_HarvardOxford.nii.gz
sub-1/sub-1_atlas/sub-1_power264.nii.gz
sub-1/sub-1_atlas/sub-1_RitcheyMTL.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer100x17.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer100x7.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer200x17.nii.gz
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10 changes: 10 additions & 0 deletions testing/t1fc36pdespike_outputs.txt
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Expand Up @@ -52,6 +52,10 @@ sub-1/fcon/power264/sub-1_power264_missing.txt
sub-1/fcon/power264/sub-1_power264.net
sub-1/fcon/power264/sub-1_power264_network.txt
sub-1/fcon/power264/sub-1_power264_ts.1D
sub-1/fcon/RitcheyMTL
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL.net
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL_network.txt
sub-1/fcon/RitcheyMTL/sub-1_RitcheyMTL_ts.1D
sub-1/fcon/schaefer100x17
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17.net
sub-1/fcon/schaefer100x17/sub-1_schaefer100x17_network.txt
Expand Down Expand Up @@ -160,6 +164,11 @@ sub-1/roiquant/power264/sub-1_power264_mean_alff.csv
sub-1/roiquant/power264/sub-1_power264_mean_alffZ.csv
sub-1/roiquant/power264/sub-1_power264_mean_reho.csv
sub-1/roiquant/power264/sub-1_power264_mean_rehoZ.csv
sub-1/roiquant/RitcheyMTL
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_alff.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_alffZ.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_reho.csv
sub-1/roiquant/RitcheyMTL/sub-1_RitcheyMTL_mean_rehoZ.csv
sub-1/roiquant/schaefer100x17
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alff.csv
sub-1/roiquant/schaefer100x17/sub-1_schaefer100x17_mean_alffZ.csv
Expand Down Expand Up @@ -203,6 +212,7 @@ sub-1/sub-1_atlas/sub-1_global.nii.gz
sub-1/sub-1_atlas/sub-1_gordon333.nii.gz
sub-1/sub-1_atlas/sub-1_HarvardOxford.nii.gz
sub-1/sub-1_atlas/sub-1_power264.nii.gz
sub-1/sub-1_atlas/sub-1_RitcheyMTL.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer100x17.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer100x7.nii.gz
sub-1/sub-1_atlas/sub-1_schaefer200x17.nii.gz
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