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@TylerSagendorf TylerSagendorf released this 07 Feb 18:33
· 24 commits to master since this release
0.4.1
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Learn about vigilant mode.
  • Removed duplicate GENCODE protein IDs from run_plexedpiper output. GENCODE IDs are currently only unique when combining the protein (ENSP) and transcript (ENST) IDs. Since there are so few duplicates, we will remove them rather than concatenating these IDs in the "protein_id" column of the output of make_results_ratio_* and make_rii_peptide_* functions.
  • Shortened UniProt headers in run_plexedpiper output to only use the middle portion of the UniProt IDs.
  • Bugfix: fixed parsing of crosstab rownames in make_rii_peptide_ph when acetylated peptides also contain PTMs denoted by a "@".
  • Requires an update to a version of MSnID built on or after 2023-01-26 when column "unique_id" was added to parse_FASTA_names output.
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