v0.3.6
- Added
use_mzIdentML
argument toread_msgf_data
to read mzid files from a local folder. - Added
prefix
argument toread_study_design
andrun_plexedpiper
. - Expanded the functionality of
filter_msgf_data
to allow for filtering at the SiteID level. This performs the same optimization procedure as when filtering at the peptide level. Also added thefilter_msgf_data_SiteID_level
wrapper.