Releases: PNNL-Comp-Mass-Spec/PHRP
Release 3.1.8904
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs. This is a console application and must be run from a Windows command prompt (or, on Linux, using Mono).
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.111 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7).
- For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of
libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Changes
- Now requires .NET Framework 4.8 (or newer)
- Added support for new columns in the TopPIC v1.5 results file
- Added support for DIA-NN
- Added support for MaxQuant modifications that specify modification composition using amino acids
PeptideHitResultsProcessor.zip
PeptideHitResultsProcessor_CentOS.zip
PeptideHitResultsProcessor_Debian.zip
Release 3.1.8056
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs. This is a console application and must be run from a Windows command prompt (or, on Linux, using Mono).
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.111 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7).
- For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of
libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Changes
- Updated ProteinFileReader that uses a new version of CsvHelper
Release 3.1.8052
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs. This is a console application and must be run from a Windows command prompt (or, on Linux, using Mono).
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.111 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7).
- For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of
libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Changes
- Add support for MSFragger results
Release 3.1.7998
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs. This is a console application and must be run from a Windows command prompt (or, on Linux, using Mono).
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.111 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7).
- For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of
libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Changes
- Fixed a bug that failed to update a parent ion mass tolerance setting for MS-GF+
- Led to minor changes in reported precursor mass error values (both ppm and Da)
- Now uses Key=Value parameter files
- Previously used XML-based parameter files
Release 3.0.7842
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs. This is a console application and must be run from a Windows command prompt (or, on Linux, using Mono).
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.111 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7).
- For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of
libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Release 1.5.7458
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs.
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.111 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7).
- For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of
libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Release 1.5.7130
File PeptideHitResultsProcessor.zip includes the application executable and required DLLs.
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
PeptideHitResultsProcessor_CentOS.zip includes the same PeptideHitResultsProcRunner.exe program, but it includes System.Data.SQLite.dll v1.0.108 and libSQLite.Interop.so specific to RHEL 7 (which should also be compatible with CentOS 7). For other Linux distributions, follow the instructions in System.Data.SQLite_Compilation_Steps_Linux.wiki for steps on compiling a system specific version of libSQLite.Interop.so
On Linux, use Mono to run the program, for example mono PeptideHitResultsProcRunner.exe
Release 1.5.7113
The zip file includes the application executable and required DLLs.
Example input and output files are in directories MSGFPlus_Example and XTandem_Example
Version 1.5.6583
The zip file includes the application executable and required DLLs.