Fix problems with ancestry aggregation & scaling on biobank-data #19
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Test should pass once pgscatalog.calc is published and tests are re-run. |
* drop pyarrow support, it doesn't scale well, and be more consistent about public path properties * refactor to use polars for reading and writing IPC files to improve scalability * fix map_elements deprecation warning * update lockfiles * fix weird path -> is_path refactor that broke this test * missed one >_>
smlmbrt
changed the title
* export key functions for sorting chromosomes / effect types * use new key functions for sorting * reduce memory usage during aggregation * fix doctest output * make aggregation steps clearer
nebfield
approved these changes
Jun 12, 2024
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