Skip to content

v0.1.1
Compare
Choose a tag to compare
@nebfield nebfield released this 24 Aug 08:40
· 382 commits to main since this release
v0.1.1
c1b5290
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Initial release of PGS Catalog utilities

This package currently exists to support the development of the PGS Catalog Calculator, but might be useful for users of the PGS Catalog. The initial release of this package has the following features:

  • Bulk download scoring files from the PGS Catalog using trait, publication, and polygenic score IDs
  • Combine multiple scoring files that follow the PGS Catalog standard (including custom unpublished scoring files) into a single file, optionally lifting over and using harmonised data where available
  • Match variants from a combined scorefile against a set of target genomes in plink, creating score files compatible with the plink2 --score parameter

More documentation can be found for each script by invoking the script with the --help parameter..

Assets 2
Loading