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bump version for release
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nebfield committed Aug 5, 2022
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4 changes: 2 additions & 2 deletions Dockerfile
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Expand Up @@ -11,8 +11,8 @@ FROM python:3.10

WORKDIR /opt/

COPY --from=builder /app/dist/pgscatalog_utils-0.1.0-py3-none-any.whl .
COPY --from=builder /app/dist/pgscatalog_utils-0.1.1-py3-none-any.whl .

RUN pip install pgscatalog_utils-0.1.0-py3-none-any.whl
RUN pip install pgscatalog_utils-0.1.1-py3-none-any.whl

RUN apt-get update && apt-get install -y sqlite3
6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -8,7 +8,7 @@ other users might find some of these tools helpful.

## Overview

* `download_scorefiles`: Download scoring files by PGS ID (accession)
* `download_scorefiles`: Download scoring files by PGS ID (accession) in genome builds GRCh37 or GRCh38
* `combine_scorefile`: Combine multiple scoring files into a single scoring file
in 'long' format
* `match_variants`: Match target variants (bim or pvar files) against the output
Expand All @@ -29,7 +29,7 @@ $ git clone https://github.com/PGScatalog/pgscatalog_utils.git
## Quickstart

```
$ download_scorefiles -i PGS000922 PGS001229 -o .
$ combine_scorefiles -s PGS*.txt.gz -o combined.txt
$ download_scorefiles -i PGS000922 PGS001229 -o . -b GRCh37
$ combine_scorefiles -s PGS*.txt.gz -o combined.txt
$ match_variants -s combined.txt -t <example.pvar> --min_overlap 0.75 --outdir .
```
2 changes: 1 addition & 1 deletion pyproject.toml
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@@ -1,6 +1,6 @@
[tool.poetry]
name = "pgscatalog_utils"
version = "0.1.0"
version = "0.1.1"
description = "Some useful utilities for working with PGS Catalog data"
homepage = "https://github.com/PGScatalog/pgscatalog_utils"
authors = ["Benjamin Wingfield <bwingfield@ebi.ac.uk>"]
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