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aulemahal authored Oct 2, 2024
2 parents f8b4fce + 95c1a45 commit e3f42bc
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2 changes: 1 addition & 1 deletion .github/workflows/add-to-project.yml
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ jobs:
- name: Generate App Token
id: token_generator
uses: actions/create-github-app-token@3378cda945da322a8db4b193e19d46352ebe2de5 # v1.10.4
uses: actions/create-github-app-token@5d869da34e18e7287c1daad50e0b8ea0f506ce69 # v1.11.0
with:
app-id: ${{ secrets.OURANOS_HELPER_BOT_ID }}
private-key: ${{ secrets.OURANOS_HELPER_BOT_KEY }}
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/bump-version.yml
Original file line number Diff line number Diff line change
Expand Up @@ -46,7 +46,7 @@ jobs:
pypi.org:443
- name: Generate App Token
id: token_generator
uses: actions/create-github-app-token@3378cda945da322a8db4b193e19d46352ebe2de5 # v1.10.4
uses: actions/create-github-app-token@5d869da34e18e7287c1daad50e0b8ea0f506ce69 # v1.11.0
with:
app-id: ${{ secrets.OURANOS_HELPER_BOT_ID }}
private-key: ${{ secrets.OURANOS_HELPER_BOT_KEY }}
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29 changes: 13 additions & 16 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -32,15 +32,12 @@ permissions:

jobs:
lint:
name: Lint (Python${{ matrix.python-version }})
name: Lint
runs-on: ubuntu-latest
if: |
(github.event.action != 'labeled') ||
(github.event.review.state == 'approved') ||
(github.event_name == 'push')
strategy:
matrix:
python-version: [ "3.9" ]
steps:
- name: Harden Runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
Expand All @@ -53,10 +50,10 @@ jobs:
pypi.org:443
- name: Checkout Repository
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
- name: Set up Python${{ matrix.python-version }}
- name: Set up Python3
uses: actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3 # v5.2.0
with:
python-version: ${{ matrix.python-version }}
python-version: "3.x"
cache: 'pip'
- name: Install CI libraries
run: |
Expand All @@ -82,7 +79,7 @@ jobs:
strategy:
matrix:
os: [ 'ubuntu-latest' ]
python-version: [ "3.9" ]
python-version: [ "3.10" ]
testdata-cache: [ '~/.cache/xclim-testdata' ]
steps:
- name: Harden Runner
Expand Down Expand Up @@ -153,20 +150,20 @@ jobs:
- os: 'windows-latest'
testdata-cache: 'C:\Users\runneradmin\AppData\Local\xclim-testdata\xclim-testdata\Cache'
markers: -m 'not slow'
python-version: "3.9"
tox-env: py39-coverage-prefetch # Test data prefetch is needed for Windows
python-version: "3.10"
tox-env: py310-coverage-prefetch # Test data prefetch is needed for Windows
# macOS builds
- os: 'macos-latest'
testdata-cache: '~/Library/Caches/xclim-testdata'
markers: '' # Slow tests
python-version: "3.10"
tox-env: py310-coverage-extras
python-version: "3.11"
tox-env: py311-coverage-extras
# Specialized tests
- os: 'ubuntu-latest'
testdata-cache: '~/.cache/xclim-testdata'
markers: -m 'not requires_internet and not slow'
python-version: "3.9"
tox-env: py39-coverage-offline-prefetch
python-version: "3.11"
tox-env: py311-coverage-sbck-offline-prefetch
- os: 'ubuntu-latest'
testdata-cache: '~/.cache/xclim-testdata'
markers: '' # No markers for notebooks
Expand Down Expand Up @@ -198,7 +195,7 @@ jobs:
- name: Checkout Repository
uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
- name: Install Eigen3 (SBCK)
if: ${{ matrix.python-version == '3.11' }}
if: ${{ matrix.python-version == '3.11' && matrix.os == 'ubuntu-latest' }}
run: |
sudo apt-get update
sudo apt-get install libeigen3-dev
Expand Down Expand Up @@ -247,7 +244,7 @@ jobs:
strategy:
matrix:
os: [ 'ubuntu-latest' ]
python-version: [ "3.9", "3.12" ]
python-version: [ "3.10", "3.12" ]
testdata-cache: [ '~/.cache/xclim-testdata' ]
defaults:
run:
Expand Down Expand Up @@ -327,7 +324,7 @@ jobs:
runs-on: ubuntu-latest
steps:
- name: Harden Runner
uses: step-security/harden-runner@5c7944e73c4c2a096b17a9cb74d65b6c2bbafbde # v2.9.1
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
disable-sudo: true
egress-policy: audit
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/publish-pypi.yml
Original file line number Diff line number Diff line change
Expand Up @@ -40,4 +40,4 @@ jobs:
run: |
python -m flit build
- name: Publish distribution 📦 to PyPI
uses: pypa/gh-action-pypi-publish@0ab0b79471669eb3a4d647e625009c62f9f3b241 # v1.10.1
uses: pypa/gh-action-pypi-publish@897895f1e160c830e369f9779632ebc134688e1b # v1.10.2
2 changes: 1 addition & 1 deletion .github/workflows/tag-testpypi.yml
Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ jobs:
run: |
python -m flit build
- name: Publish distribution 📦 to Test PyPI
uses: pypa/gh-action-pypi-publish@0ab0b79471669eb3a4d647e625009c62f9f3b241 # v1.10.1
uses: pypa/gh-action-pypi-publish@897895f1e160c830e369f9779632ebc134688e1b # v1.10.2
with:
repository-url: https://test.pypi.org/legacy/
skip-existing: true
11 changes: 10 additions & 1 deletion CHANGELOG.rst
Original file line number Diff line number Diff line change
Expand Up @@ -4,16 +4,23 @@ Changelog

v0.53.0 (unreleased)
--------------------
Contributors to this version: Adrien Lamarche (:user:`LamAdr`), Trevor James Smith (:user:`Zeitsperre`), Éric Dupuis (:user:`coxipi`), Pascal Bourgault (:user:`aulemahal`).
Contributors to this version: Adrien Lamarche (:user:`LamAdr`), Trevor James Smith (:user:`Zeitsperre`), Éric Dupuis (:user:`coxipi`), Pascal Bourgault (:user:`aulemahal`), Sascha Hofmann (:user:`saschahofmann`).

Announcements
^^^^^^^^^^^^^
* `xclim` has now adopted the `Scientific Python SPEC 0 <https://scientific-python.org/specs/spec-0000/>`_ conventions for its suggested dependency support schedule. (:issue:`1914`, :pull:`1915`).
* `xclim` has dropped support for Python 3.9 and adopted Python 3.10+ code styling conventions. (:issue:`1914`, :pull:`1915`).

New indicators
^^^^^^^^^^^^^^
* New ``heat_spell_frequency``, ``heat_spell_max_length`` and ``heat_spell_total_length`` : spell length statistics on a bivariate condition that uses the average over a window by default. (:pull:`1885`).
* New ``chill_portion`` and ``chill_unit``: chill portion based on the Dynamic Model and chill unit based on the Utah model indicators. (:issue:`1753`, :pull:`1909`).

New features and enhancements
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
* New generic ``xclim.indices.generic.spell_mask`` that returns a mask of which days are part of a spell. Supports multivariate conditions and weights. Used in new generic index ``xclim.indices.generic.bivariate_spell_length_statistics`` that extends ``spell_length_statistics`` to two variables. (:pull:`1885`).
* Indicator parameters can now be assigned a new name, different from the argument name in the compute function. (:pull:`1885`).
* Helper function ``xclim.indices.helpers.make_hourly_temperature`` to estimate hourly temperatures from daily min and max temperatures. (:pull:`1909`).

Bug fixes
^^^^^^^^^
Expand All @@ -25,6 +32,7 @@ Breaking changes
* `platformdirs` is no longer a direct dependency of `xclim`, but `pooch` is required to use many of the new testing functions (installable via `pip install pooch` or `pip install 'xclim[dev]'`). (:pull:`1889`).
* The following previously-deprecated functions have now been removed from `xclim`: ``xclim.core.calendar.convert_calendar``, ``xclim.core.calendar.date_range``, ``xclim.core.calendar.date_range_like``, ``xclim.core.calendar.interp_calendar``, ``xclim.core.calendar.days_in_year``, ``xclim.core.calendar.datetime_to_decimal_year``. For guidance on how to migrate to alternatives, see the `version 0.50.0 Breaking changes <#v0-50-0-2024-06-17>`_. (:issue:`1010`, :pull:`1845`).
* `transform` argument of `OTC/dOTC` classes (and child functions) is changed to `normalization`, and `numIterMax` is changed to `num_iter_max` in `utils.optimal_transport` (:pull:`1896`).
* `xclim` now requires `numpy >=1.23.0` and `scikit-learn >=1.1.0`, as well as (optionally) `ipython >=8.5.0`, `nbsphinx >=0.9.5`, and `matplotlib >=3.6.0` . (:issue:`1914`, :pull:`1915`).

Internal changes
^^^^^^^^^^^^^^^^
Expand All @@ -46,6 +54,7 @@ Internal changes
* Added formatting for `Markdown` files.
* Added the `bugbear`, `pyupgrade` checks to the `ruff` formatter.
* Adjusted `mypy` checks to be more standardized.
* Renamed annual deprecated frequency alias `"A"` to `"Y"` (:pull:`1930`).

CI changes
^^^^^^^^^^
Expand Down
9 changes: 4 additions & 5 deletions CI/requirements_ci.in
Original file line number Diff line number Diff line change
@@ -1,8 +1,7 @@
bump-my-version==0.26.1
coveralls==4.0.1
deptry==0.20.0
flit==3.9.0
pip==24.2
pylint==3.2.7
tox==4.19.0
tox-gh==1.3.3
pip==24.2.0
pylint==3.3.1
tox==4.20.0
tox-gh==1.4.1
93 changes: 14 additions & 79 deletions CI/requirements_ci.txt
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
#
# This file is autogenerated by pip-compile with Python 3.9
# This file is autogenerated by pip-compile with Python 3.10
# by the following command:
#
# pip-compile --generate-hashes --output-file=CI/requirements_ci.txt CI/requirements_ci.in
Expand All @@ -8,9 +8,9 @@ annotated-types==0.7.0 \
--hash=sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53 \
--hash=sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89
# via pydantic
astroid==3.2.4 \
--hash=sha256:0e14202810b30da1b735827f78f5157be2bbd4a7a59b7707ca0bfc2fb4c0063a \
--hash=sha256:413658a61eeca6202a59231abb473f932038fbcbf1666587f66d482083413a25
astroid==3.3.4 \
--hash=sha256:5eba185467253501b62a9f113c263524b4f5d55e1b30456370eed4cdbd6438fd \
--hash=sha256:e73d0b62dd680a7c07cb2cd0ce3c22570b044dd01bd994bc3a2dd16c6cbba162
# via pylint
bracex==2.4 \
--hash=sha256:a27eaf1df42cf561fed58b7a8f3fdf129d1ea16a81e1fadd1d17989bc6384beb \
Expand Down Expand Up @@ -135,64 +135,6 @@ colorama==0.4.6 \
--hash=sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44 \
--hash=sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6
# via tox
coverage[toml]==7.6.0 \
--hash=sha256:0086cd4fc71b7d485ac93ca4239c8f75732c2ae3ba83f6be1c9be59d9e2c6382 \
--hash=sha256:01c322ef2bbe15057bc4bf132b525b7e3f7206f071799eb8aa6ad1940bcf5fb1 \
--hash=sha256:03cafe82c1b32b770a29fd6de923625ccac3185a54a5e66606da26d105f37dac \
--hash=sha256:044a0985a4f25b335882b0966625270a8d9db3d3409ddc49a4eb00b0ef5e8cee \
--hash=sha256:07ed352205574aad067482e53dd606926afebcb5590653121063fbf4e2175166 \
--hash=sha256:0d1b923fc4a40c5832be4f35a5dab0e5ff89cddf83bb4174499e02ea089daf57 \
--hash=sha256:0e7b27d04131c46e6894f23a4ae186a6a2207209a05df5b6ad4caee6d54a222c \
--hash=sha256:1fad32ee9b27350687035cb5fdf9145bc9cf0a094a9577d43e909948ebcfa27b \
--hash=sha256:289cc803fa1dc901f84701ac10c9ee873619320f2f9aff38794db4a4a0268d51 \
--hash=sha256:3c59105f8d58ce500f348c5b56163a4113a440dad6daa2294b5052a10db866da \
--hash=sha256:46c3d091059ad0b9c59d1034de74a7f36dcfa7f6d3bde782c49deb42438f2450 \
--hash=sha256:482855914928c8175735a2a59c8dc5806cf7d8f032e4820d52e845d1f731dca2 \
--hash=sha256:49c76cdfa13015c4560702574bad67f0e15ca5a2872c6a125f6327ead2b731dd \
--hash=sha256:4b03741e70fb811d1a9a1d75355cf391f274ed85847f4b78e35459899f57af4d \
--hash=sha256:4bea27c4269234e06f621f3fac3925f56ff34bc14521484b8f66a580aacc2e7d \
--hash=sha256:4d5fae0a22dc86259dee66f2cc6c1d3e490c4a1214d7daa2a93d07491c5c04b6 \
--hash=sha256:543ef9179bc55edfd895154a51792b01c017c87af0ebaae092720152e19e42ca \
--hash=sha256:54dece71673b3187c86226c3ca793c5f891f9fc3d8aa183f2e3653da18566169 \
--hash=sha256:6379688fb4cfa921ae349c76eb1a9ab26b65f32b03d46bb0eed841fd4cb6afb1 \
--hash=sha256:65fa405b837060db569a61ec368b74688f429b32fa47a8929a7a2f9b47183713 \
--hash=sha256:6616d1c9bf1e3faea78711ee42a8b972367d82ceae233ec0ac61cc7fec09fa6b \
--hash=sha256:6fe885135c8a479d3e37a7aae61cbd3a0fb2deccb4dda3c25f92a49189f766d6 \
--hash=sha256:7221f9ac9dad9492cecab6f676b3eaf9185141539d5c9689d13fd6b0d7de840c \
--hash=sha256:76d5f82213aa78098b9b964ea89de4617e70e0d43e97900c2778a50856dac605 \
--hash=sha256:7792f0ab20df8071d669d929c75c97fecfa6bcab82c10ee4adb91c7a54055463 \
--hash=sha256:831b476d79408ab6ccfadaaf199906c833f02fdb32c9ab907b1d4aa0713cfa3b \
--hash=sha256:9146579352d7b5f6412735d0f203bbd8d00113a680b66565e205bc605ef81bc6 \
--hash=sha256:9cc44bf0315268e253bf563f3560e6c004efe38f76db03a1558274a6e04bf5d5 \
--hash=sha256:a73d18625f6a8a1cbb11eadc1d03929f9510f4131879288e3f7922097a429f63 \
--hash=sha256:a8659fd33ee9e6ca03950cfdcdf271d645cf681609153f218826dd9805ab585c \
--hash=sha256:a94925102c89247530ae1dab7dc02c690942566f22e189cbd53579b0693c0783 \
--hash=sha256:ad4567d6c334c46046d1c4c20024de2a1c3abc626817ae21ae3da600f5779b44 \
--hash=sha256:b2e16f4cd2bc4d88ba30ca2d3bbf2f21f00f382cf4e1ce3b1ddc96c634bc48ca \
--hash=sha256:bbdf9a72403110a3bdae77948b8011f644571311c2fb35ee15f0f10a8fc082e8 \
--hash=sha256:beb08e8508e53a568811016e59f3234d29c2583f6b6e28572f0954a6b4f7e03d \
--hash=sha256:c4cbe651f3904e28f3a55d6f371203049034b4ddbce65a54527a3f189ca3b390 \
--hash=sha256:c7b525ab52ce18c57ae232ba6f7010297a87ced82a2383b1afd238849c1ff933 \
--hash=sha256:ca5d79cfdae420a1d52bf177de4bc2289c321d6c961ae321503b2ca59c17ae67 \
--hash=sha256:cdab02a0a941af190df8782aafc591ef3ad08824f97850b015c8c6a8b3877b0b \
--hash=sha256:d17c6a415d68cfe1091d3296ba5749d3d8696e42c37fca5d4860c5bf7b729f03 \
--hash=sha256:d39bd10f0ae453554798b125d2f39884290c480f56e8a02ba7a6ed552005243b \
--hash=sha256:d4b3cd1ca7cd73d229487fa5caca9e4bc1f0bca96526b922d61053ea751fe791 \
--hash=sha256:d50a252b23b9b4dfeefc1f663c568a221092cbaded20a05a11665d0dbec9b8fb \
--hash=sha256:da8549d17489cd52f85a9829d0e1d91059359b3c54a26f28bec2c5d369524807 \
--hash=sha256:dcd070b5b585b50e6617e8972f3fbbee786afca71b1936ac06257f7e178f00f6 \
--hash=sha256:ddaaa91bfc4477d2871442bbf30a125e8fe6b05da8a0015507bfbf4718228ab2 \
--hash=sha256:df423f351b162a702c053d5dddc0fc0ef9a9e27ea3f449781ace5f906b664428 \
--hash=sha256:dff044f661f59dace805eedb4a7404c573b6ff0cdba4a524141bc63d7be5c7fd \
--hash=sha256:e7e128f85c0b419907d1f38e616c4f1e9f1d1b37a7949f44df9a73d5da5cd53c \
--hash=sha256:ed8d1d1821ba5fc88d4a4f45387b65de52382fa3ef1f0115a4f7a20cdfab0e94 \
--hash=sha256:f2501d60d7497fd55e391f423f965bbe9e650e9ffc3c627d5f0ac516026000b8 \
--hash=sha256:f7db0b6ae1f96ae41afe626095149ecd1b212b424626175a6633c2999eaad45b
# via coveralls
coveralls==4.0.1 \
--hash=sha256:7a6b1fa9848332c7b2221afb20f3df90272ac0167060f41b5fe90429b30b1809 \
--hash=sha256:7b2a0a2bcef94f295e3cf28dcc55ca40b71c77d1c2446b538e85f0f7bc21aa69
# via -r CI/requirements_ci.in
deptry==0.20.0 \
--hash=sha256:012fb106dbea6ca95196cdcd75ac90c516c8f01292f7934f2e802a7cf025a660 \
--hash=sha256:0c90ce64e637d0e902bc97c5a020adecfee9e9f09ee0bf4c61554994139bebdb \
Expand All @@ -215,9 +157,6 @@ distlib==0.3.8 \
--hash=sha256:034db59a0b96f8ca18035f36290806a9a6e6bd9d1ff91e45a7f172eb17e51784 \
--hash=sha256:1530ea13e350031b6312d8580ddb6b27a104275a31106523b8f123787f494f64
# via virtualenv
docopt==0.6.2 \
--hash=sha256:49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491
# via coveralls
docutils==0.21.2 \
--hash=sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f \
--hash=sha256:dafca5b9e384f0e419294eb4d2ff9fa826435bf15f15b7bd45723e8ad76811b2
Expand Down Expand Up @@ -382,9 +321,9 @@ pygments==2.18.0 \
--hash=sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199 \
--hash=sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a
# via rich
pylint==3.2.7 \
--hash=sha256:02f4aedeac91be69fb3b4bea997ce580a4ac68ce58b89eaefeaf06749df73f4b \
--hash=sha256:1b7a721b575eaeaa7d39db076b6e7743c993ea44f57979127c517c6c572c803e
pylint==3.3.1 \
--hash=sha256:2f846a466dd023513240bc140ad2dd73bfc080a5d85a710afdb728c420a5a2b9 \
--hash=sha256:9f3dcc87b1203e612b78d91a896407787e708b3f189b5fa0b307712d49ff0c6e
# via -r CI/requirements_ci.in
pyproject-api==1.7.1 \
--hash=sha256:2dc1654062c2b27733d8fd4cdda672b22fe8741ef1dde8e3a998a9547b071eeb \
Expand All @@ -401,9 +340,7 @@ questionary==2.0.1 \
requests==2.32.3 \
--hash=sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760 \
--hash=sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6
# via
# coveralls
# flit
# via flit
rich==13.7.1 \
--hash=sha256:4edbae314f59eb482f54e9e30bf00d33350aaa94f4bfcd4e9e3110e64d0d7222 \
--hash=sha256:9be308cb1fe2f1f57d67ce99e95af38a1e2bc71ad9813b0e247cf7ffbcc3a432
Expand All @@ -418,7 +355,6 @@ tomli==2.0.1 \
--hash=sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc \
--hash=sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f
# via
# coverage
# deptry
# pylint
# pyproject-api
Expand All @@ -433,15 +369,15 @@ tomlkit==0.13.0 \
# via
# bump-my-version
# pylint
tox==4.19.0 \
--hash=sha256:66177d887f9d7ef8eaa9b58b187f7b865fa4c58650086c01336e82c9831e1867 \
--hash=sha256:6e20a520db7710f6980b8ec96bde189d6b8cf41b327ec703b03e1a2a447b1aaf
tox==4.20.0 \
--hash=sha256:21a8005e3d3fe5658a8e36b8ca3ed13a4230429063c5cc2a2fdac6ee5aa0de34 \
--hash=sha256:5b78a49b6eaaeab3ae4186415e7c97d524f762ae967c63562687c3e5f0ec23d5
# via
# -r CI/requirements_ci.in
# tox-gh
tox-gh==1.3.3 \
--hash=sha256:7a05f176ab2180554ada4fc74fd25529d8470d8944d99ac77dfa7b0773a20e25 \
--hash=sha256:99cfcac42706c6b5f4656ca1a4b5fe50b1f1d2c14549c0a542469fb679d29a3f
tox-gh==1.4.1 \
--hash=sha256:005b33d16eef1bd1dae9f7d8b3cef53374af7d475f9c9c33ef098247741fb694 \
--hash=sha256:da422beccbdc5ad5994fe8faf6c193f2d794e957628b052ba23e7fcf9e2e340f
# via -r CI/requirements_ci.in
typing-extensions==4.12.2 \
--hash=sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d \
Expand All @@ -450,7 +386,6 @@ typing-extensions==4.12.2 \
# astroid
# pydantic
# pydantic-core
# pylint
# rich-click
urllib3==2.2.2 \
--hash=sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472 \
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