fix: account for blank RNA column

OpenOmics · Jul 17, 2024 · 5347491 · 5347491
1 parent 2b8ce38
commit 5347491
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/run.py b/src/run.py
@@ -702,7 +702,8 @@ def valid_input(sheet):
         row['DNA'] = os.path.abspath(row['DNA'])
         if not os.path.exists(row['DNA']):
             raise argparse.ArgumentTypeError(f"Sample sheet path `{row['DNA']}` does not exist")
-        if 'RNA' in row:
+        if 'RNA' in row and not row['RNA'] in ('', None, 'None'):
+            import ipdb; ipdb.set_trace()
             RNA_included = True
             row['RNA'] = os.path.abspath(row['RNA'])
             if not os.path.exists(row['RNA']):