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Fix crash reading non-standard PDB file #1161

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merged 3 commits into from
Sep 2, 2022

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@ghutchis ghutchis commented Sep 1, 2022

Reported by teslim on the forum:
https://discuss.avogadro.cc/t/avogadro-quit-unexpectedly/3953/5

Signed-off-by: Geoff Hutchison geoff.hutchison@gmail.com

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Reported by teslim on the forum:
https://discuss.avogadro.cc/t/avogadro-quit-unexpectedly/3953/5

Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
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ghutchis commented Sep 1, 2022

I'll add a unit test for this kind of problem - two parts:

  • didn't include element column present in valid PDB (columns 76+)
  • included floating points for CONECT records 1.0 2.0 .. etc.

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avo-bot commented Sep 1, 2022

This pull request has been mentioned on Avogadro Discussion. There might be relevant details there:

https://discuss.avogadro.cc/t/avogadro-quit-unexpectedly/3953/6

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github-actions bot commented Sep 1, 2022

Here are the build results
Avogadro2.AppImage
Ubuntu-2004.tar.gz
Artifacts will only be retained for 90 days.

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github-actions bot commented Sep 1, 2022

Here are the build results
Avogadro2.AppImage
Ubuntu-2004.tar.gz
Artifacts will only be retained for 90 days.

Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
Signed-off-by: Geoff Hutchison <geoff.hutchison@gmail.com>
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github-actions bot commented Sep 2, 2022

Here are the build results
Avogadro2.AppImage
macOS.dmg
Ubuntu-2004.tar.gz
Win64.exe
Artifacts will only be retained for 90 days.

@ghutchis ghutchis merged commit ae92987 into OpenChemistry:master Sep 2, 2022
@ghutchis ghutchis deleted the fix-pdb-crash branch September 2, 2022 00:48
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github-actions bot commented Sep 2, 2022

Here are the build results
Avogadro2.AppImage
macOS.dmg
Ubuntu-2004.tar.gz
Win64.exe
Artifacts will only be retained for 90 days.

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2 participants