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2364 export expression profile domain object (#2461)
* initial try * temp nuget update * adjusting mapper * Fixes #2344 Implement "Parameter Value Export" for Expression Profiles BB in PK-Sim (#2442) * use GetAllChildren of Individual (#2445) * 2438 outptu mappings not cleared (#2444) * waiting for Core PR to be accepted * nugets updated * updating nuget * temp nuget update * working export * spacing * updating packages * do not map object path for 'ROOT' * do not repeat formulae in the formula cache * adding tests * fixing test * correction * consolidate assets * correcting nugets * code review changes * code review * PR feedback * update core version * Appveyor builds turned on * PR feedback * pr feedback Co-authored-by: Robert McIntosh <261477+rwmcintosh@users.noreply.github.com>
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src/PKSim.Core/Mappers/ExpressionProfileToExpressionProfileBuildingBlockMapper.cs
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,92 @@ | ||
| using OSPSuite.Core; | ||
| using OSPSuite.Core.Domain; | ||
| using OSPSuite.Core.Domain.Builder; | ||
| using OSPSuite.Core.Domain.Formulas; | ||
| using OSPSuite.Core.Domain.Services; | ||
| using OSPSuite.Utility; | ||
| using PKSim.Assets; | ||
| using PKSim.Core.Model; | ||
| using IFormulaFactory = PKSim.Core.Model.IFormulaFactory; | ||
|
|
||
| namespace PKSim.Core.Mappers | ||
| { | ||
| public interface IExpressionProfileToExpressionProfileBuildingBlockMapper : IMapper<ExpressionProfile, ExpressionProfileBuildingBlock> | ||
| { | ||
| } | ||
|
|
||
| public class ExpressionProfileToExpressionProfileBuildingBlockMapper : IExpressionProfileToExpressionProfileBuildingBlockMapper | ||
| { | ||
| private readonly IObjectBaseFactory _objectBaseFactory; | ||
| private readonly IEntityPathResolver _entityPathResolver; | ||
| private readonly IFormulaFactory _formulaFactory; | ||
| private readonly IApplicationConfiguration _applicationConfiguration; | ||
|
|
||
| public ExpressionProfileToExpressionProfileBuildingBlockMapper(IObjectBaseFactory objectBaseFactory, IEntityPathResolver entityPathResolver, IFormulaFactory formulaFactory, IApplicationConfiguration applicationConfiguration) | ||
| { | ||
| _objectBaseFactory = objectBaseFactory; | ||
| _entityPathResolver = entityPathResolver; | ||
| _formulaFactory = formulaFactory; | ||
| _applicationConfiguration = applicationConfiguration; | ||
| } | ||
|
|
||
| public ExpressionProfileBuildingBlock MapFrom(ExpressionProfile expressionProfile) | ||
| { | ||
| var expressionProfileBuildingBlock = _objectBaseFactory.Create<ExpressionProfileBuildingBlock>(); | ||
|
|
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| expressionProfileBuildingBlock.Name = expressionProfile.Name; | ||
| expressionProfileBuildingBlock.PKSimVersion = _applicationConfiguration.Version; | ||
| expressionProfileBuildingBlock.Description = expressionProfile.Description; | ||
|
|
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| expressionProfileBuildingBlock.Type = mapExpressionType(expressionProfile.Molecule.MoleculeType); | ||
|
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| var allParameters = expressionProfile.GetAllChildren<IParameter>(); | ||
|
|
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| foreach (var parameter in allParameters) | ||
| { | ||
| var expressionParameter = mapExpressionParameterFromExpressionProfile(parameter, expressionProfileBuildingBlock); | ||
| expressionProfileBuildingBlock.Add(expressionParameter); | ||
| } | ||
|
|
||
| return expressionProfileBuildingBlock; | ||
| } | ||
|
|
||
| private ExpressionType mapExpressionType(QuantityType moleculeType) | ||
| { | ||
| switch (moleculeType) | ||
| { | ||
| case QuantityType.Enzyme: | ||
| return ExpressionTypes.MetabolizingEnzyme; | ||
| case QuantityType.Transporter: | ||
| return ExpressionTypes.TransportProtein; | ||
| case QuantityType.OtherProtein: | ||
| return ExpressionTypes.ProteinBindingPartner; | ||
| } | ||
|
|
||
| throw new PKSimException(PKSimConstants.Error.CouldNotFindMoleculeType(moleculeType.ToString())); | ||
| } | ||
|
|
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| private ExpressionParameter mapExpressionParameterFromExpressionProfile(IParameter parameter, | ||
| ExpressionProfileBuildingBlock expressionProfileBuildingBlock) | ||
| { | ||
| var expressionParameter = _objectBaseFactory.Create<ExpressionParameter>(); | ||
|
|
||
| if (parameter.Formula != null && parameter.Formula.IsCachable()) | ||
| { | ||
| var formula = _formulaFactory.RateFor(CoreConstants.CalculationMethod.EXPRESSION_PARAMETERS, parameter.Formula.Name, | ||
| expressionProfileBuildingBlock.FormulaCache); | ||
| expressionParameter.Formula = formula; | ||
| } | ||
| else | ||
| { | ||
| (expressionParameter.StartValue, _) = parameter.TryGetValue(); | ||
| } | ||
|
|
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| expressionParameter.Name = parameter.Name; | ||
|
|
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| expressionParameter.Path = _entityPathResolver.ObjectPathFor(parameter); | ||
| expressionParameter.Dimension = parameter.Dimension; | ||
| expressionParameter.DisplayUnit = parameter.DisplayUnit; | ||
| return expressionParameter; | ||
| } | ||
| } | ||
| } |
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