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Submit commands on another host via ssh #204

Merged
merged 17 commits into from
Aug 5, 2020
Merged

Submit commands on another host via ssh #204

merged 17 commits into from
Aug 5, 2020

Commits on Jun 19, 2020

  1. Modified torque to use submit_host to submit jobs via ssh 

    Made Adapters::Helper.ssh_wrap to return this command wrapped in ssh
    Matthew Hu committed Jun 19, 2020
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  2. Modified SGE to use submit_host

    Matthew Hu committed Jun 19, 2020
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  3. Modified slurm to use submit_host

    Matthew Hu committed Jun 19, 2020
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  4. Modified PBSpro to use submit_host

    Matthew Hu committed Jun 19, 2020
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  5. Modified LSF to use submit_host

    Matthew Hu committed Jun 19, 2020
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  6. Add end to helper class

    Matthew Hu committed Jun 19, 2020
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Commits on Jun 22, 2020

  1. Restore previous host variables 

    Added commands to ssh
    @matthu017
    matthu017 committed Jun 22, 2020
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  2. Added submit_host to attr_reader in batch 

    Made rspec tests for ssh wrapper
    @matthu017
    matthu017 committed Jun 22, 2020
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Commits on Jun 23, 2020

  1. Added cmd_args to provide flags to the desired command 

    Open3.capture3 uses args in array format
    @matthu017
    matthu017 committed Jun 23, 2020
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  2. Use StrictHostKeyChecking

    @matthu017
    matthu017 committed Jun 23, 2020
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Commits on Jun 26, 2020

  1. Changed rspec files to match changes

    @matthu017
    matthu017 committed Jun 26, 2020
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Commits on Jun 27, 2020

  1. Added strict_host_checking to be set under job_config (yes or no) 

    -defaults to yes

use to_s to guard against nil objects
    @matthu017
    matthu017 committed Jun 27, 2020
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Commits on Jun 29, 2020

  1. Use booleans instead of yes/no

    @matthu017
    matthu017 committed Jun 29, 2020
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  2. Added export of envvars through ssh

    @matthu017
    matthu017 committed Jun 29, 2020
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Commits on Jul 2, 2020

  1. Changed submission from one string to array

    @matthu017
    matthu017 committed Jul 2, 2020
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Commits on Aug 5, 2020

  1. fix modifying cmd_args arg in method

    @ericfranz
    ericfranz committed Aug 5, 2020
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  2. Merge branch 'master' into ssh_wrapper 

    Conflicts:
	lib/ood_core/job/adapters/slurm.rb
    @ericfranz
    ericfranz committed Aug 5, 2020
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