Finalize new docs skeleton

docs/index.html

@@ -331,81 +331,84 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OMOP GIS </div></a>
+      <a class="navbar-brand" href="index.html"><div><img src="ohdsi16x16.png"></img> OHDSI GIS </div></a>
     </div>
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
-  <a href="applications.html">
-    <span class="fa fa-landmark"></span>
+  <a href="index.html">
+    <span class="fa fa-home"></span>
 
-    Applications
+    Home
   </a>
 </li>
 <li>
-  <a href="installation.html">
-    <span class="fa fa-landmark"></span>
+  <a href="background.html">
+    <span class="fa fa-circle-info"></span>
 
-    Installation
+    Background
   </a>
 </li>
 <li>
-  <a href="dataModel.html">
+  <a href="gaia-datamodels.html">
     <span class="fa fa-database"></span>
 
-    Data Model
+    Data Models
   </a>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
-    <span class="fa fa-list"></span>
+    <span class="fa fa-globe"></span>
 
-    Documentation
+    Gaia
 
     <span class="caret"></span>
   </a>
   <ul class="dropdown-menu" role="menu">
     <li>
-      <a href="terminology.html">Terminology</a>
+      <a href="gaia-intro.html">Introduction</a>
+    </li>
+    <li>
+      <a href="gaia-terminology.html">Terminology</a>
     </li>
     <li>
-      <a href="gaiaCore/index.html">gaiaCore</a>
+      <a href="gaia-catalog.html">GaiaCatalog</a>
     </li>
     <li class="dropdown-submenu">
-      <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">gaiaDB</a>
+      <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">GaiaCore</a>
       <ul class="dropdown-menu" role="menu">
         <li>
-          <a href="erd.html">Diagrams</a>
+          <a href="gaia-core-overview.html">Overview</a>
+        </li>
+        <li>
+          <a href="gaiaCore/index.html">R Package</a>
         </li>
       </ul>
     </li>
     <li class="dropdown-submenu">
-      <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Geocoding Workflows</a>
+      <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">Extensions</a>
       <ul class="dropdown-menu" role="menu">
         <li>
-          <a href="geocodingFull.html">Geocoding the Location Table (Full)</a>
-        </li>
-        <li>
-          <a href="geocodingCohort.html">Geocoding a Cohort</a>
+          <a href="gaia-extension-ohdsi.html">GaiaOhdsi</a>
         </li>
       </ul>
     </li>
   </ul>
 </li>
 <li class="dropdown">
   <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
-    <span class="fa fa-globe"></span>
+    <span class="fa fa-question"></span>
 
-    Contributor Resources
+    How to
 
     <span class="caret"></span>
   </a>
   <ul class="dropdown-menu" role="menu">
     <li>
-      <a href="documentationEditing.html">How to Edit Documentation</a>
+      <a href="geocodingFull.html">Geocoding the Location Table (Full)</a>
     </li>
     <li>
-      <a href="dataModelEditing.html">How to Propose Changes to the gaiaDB Data Model</a>
+      <a href="geocodingCohort.html">Geocoding a Cohort</a>
     </li>
     <li>
       <a href="localDataSource.html">How to Add Data Sources to a Local gaiaDB Instance</a>
@@ -414,6 +417,23 @@
       <a href="shareDataSource.html">Sharing Your Local Data Sources</a>
     </li>
   </ul>
+</li>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
+    <span class="fa fa-info"></span>
+
+    Getting Involved
+
+    <span class="caret"></span>
+  </a>
+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="usecase_process.html">Use Case Proposals</a>
+    </li>
+    <li>
+      <a href="documentationEditing.html">How to Edit Documentation</a>
+    </li>
+  </ul>
 </li>
       </ul>
       <ul class="nav navbar-nav navbar-right">

rmd/_site.yml

@@ -19,40 +19,44 @@ navbar:
     - text: "Background"
       icon: fa-circle-info
       href: background.html
-    - text: "Gaia Overview"
-      icon: fa-landmark
-      href: overview.html
-    - text: "Installation"
-      icon: fa-landmark
-      href: installation.html
-    - text: "Data Model"
+    - text: "Data Models"
       icon: fa-database
-      href: dataModel.html
-    - text: "User Documentation"
-      icon: fa-list
+      href: gaia-datamodels.html
+    - text: "Gaia"
+      icon: fa-globe
       menu:
+        - text: "Introduction"
+          href: gaia-intro.html                     # TODO add the architecture diagram
         - text: "Terminology"
-          href: terminology.html
-        - text: "gaiaCore"
-          href: "gaiaCore/index.html"
-        - text: "gaiaDB"
+          href: gaia-terminology.html               # TODO edit and update
+        - text: "GaiaCatalog"
+          href: gaia-catalog.html
+        - text: "GaiaCore"
           menu:
-            - text: "Diagrams"
-              href: "erd.html"
-        - text: "Geocoding Workflows"
+            - text: "Overview"
+              href: gaia-core-overview.html         # TODO create this
+            - text: "R Package"
+              href: "gaiaCore/index.html"
+        - text: "Extensions"
           menu:
-            - text: "Geocoding the Location Table (Full)"
-              href: "geocodingFull.html"
-            - text: "Geocoding a Cohort"
-              href: "geocodingCohort.html"
-    - text: "Contributor Resources"
-      icon: fa-globe
+            - text: "GaiaOhdsi"
+              href: gaia-extension-ohdsi.html       # TODO create this
+    - text: "How to"
+      icon: fa-question
       menu:
-        - text: "How to Edit Documentation"
-          href: documentationEditing.html
-        - text: "How to Propose Changes to the gaiaDB Data Model"
-          href: dataModelEditing.html
+        - text: "Geocoding the Location Table (Full)"
+          href: geocodingFull.html              # TODO combine into one geocoding article
+        - text: "Geocoding a Cohort"
+          href: geocodingCohort.html            # TODO combine into one geocoding article
         - text: "How to Add Data Sources to a Local gaiaDB Instance"
           href: localDataSource.html
         - text: "Sharing Your Local Data Sources"
           href: shareDataSource.html
+    - text: "Getting Involved"
+      icon: fa-info
+      menu:
+        - text: "Use Case Proposals"
+          href: usecase_process.html
+        - text: "How to Edit Documentation"
+          href: documentationEditing.html           # TODO add a quick para on cycle of clone repo -> edit RMD -> regenerate with render_gaia_site.R
+

rmd/background.Rmd

@@ -47,7 +47,6 @@ OHDSI GIS Workgroup October 10, 2023 Update ([video](https://youtu.be/QZY-slWdsM
 
 OHDSI GIS Workgroup 2023 Objectives and Key Results ([video](https://www.youtube.com/watch?v=bd0htzO1hx4&t=1103s), [slides](https://www.ohdsi.org/wp-content/uploads/2023/02/GIS-OKRs2023Q1.pdf))
 
-
 OHDSI GIS Workgroup August 23, 2022 Update ([video](https://youtu.be/d8jIAm9cssM))
 <br>