Merge pull request #120 from lsetiawan/docker_test

Some changes to Fix URL Resolving and also added docker stuff

.gitignore

@@ -25,6 +25,8 @@ lib64
 __pycache__
 
 templatesAndSettings/settings.py
+templatesAndSettings/settings
+.gitignore
 odm2djangoadmin.git
 omit
 migrations

docker/Dockerfile

@@ -0,0 +1,46 @@
+FROM miniconda:latest
+
+ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
+
+LABEL description='Django admin app for Observation Data Model 2 (ODM2)' \
+      url='https://github.com/miguelcleon/ODM2-Admin' \
+      author='Miguel Leon' \
+      author_email='leonmi@sas.upenn.edu' \
+      development_status='5 - Production/Stable' \
+      environment='Console' \
+      intended_audience='Science/Research, Developers, Education' \
+      license='MIT License' \
+      operating_system='OS Independent' \
+      programming_language='Python' \
+      topic='Scientific/Engineering, Education'
+
+EXPOSE 8010
+EXPOSE 5432
+
+VOLUME /db
+
+# Setting up postgresql database
+RUN apt-get update --fix-missing && apt-get install -y postgresql postgresql-client postgresql-contrib postgis
+
+RUN git clone "https://github.com/lsetiawan/ODM2-Admin"
+
+RUN cd ODM2-Admin && latest=$(git describe --tags) && git checkout ${latest}
+
+RUN service postgresql start && su - postgres -c 'psql -U postgres -c "create database odm2_db"'
+
+# RUN service postgresql start && su - postgres -c 'psql -U postgres -c "create database odm2_db"' && \
+#    su - postgres -c 'pg_restore -d odm2_db -1 -v "/ODM2-Admin/ODM2AdminExamplePostgresqlDB"' && \
+#    su - postgres -c "psql -U postgres -d postgres -c \"alter user postgres with password 'test';\"" 
+
+# creates an env with the depepencies
+RUN conda create --yes -n odm2adminenv -c conda-forge python=2.7 --file /ODM2-Admin/requirements.txt
+RUN update-rc.d postgresql enable
+
+COPY development.py /ODM2-Admin/templatesAndSettings/settings/
+COPY entrypoint.sh /
+COPY startup.sh /
+
+RUN chmod 755 /entrypoint.sh
+RUN chmod 755 /startup.sh
+
+CMD ["/bin/bash", "entrypoint.sh", "startup.sh"]

docker/README.md

@@ -0,0 +1,8 @@
+# ODM2Admin Docker Image Creation
+
+Requirements to run [docker image](https://hub.docker.com/r/lsetiawan/odm2admin/):
+
+1. ODM2 Database backup sql for PostgreSQL called odm2admindb.backup.
+2. Docker installed on Linux or MacOS, currently not working on windows.
+To run:
+$ docker run -d -p 8010:8010 -v path/to/local/db/backup/folder/:/db/ lsetiawan/odm2admin:latest

docker/development.py

@@ -0,0 +1,70 @@
+"""
+Development settings and globals.
+"""
+
+from base import *
+
+""" DEBUG CONFIGURATION """
+# Disable debugging by default.
+DEBUG = True
+""" END DEBUG CONFIGURATION """
+
+""" ALLOWED HOSTS CONFIGURATION """
+ALLOWED_HOSTS = ['127.0.0.1',]
+""" END ALLOWED HOSTS CONFIGURATION """
+
+
+""" EMAIL CONFIGURATION """
+EMAIL_HOST = 'smtp.host'
+EMAIL_HOST_USER = 'user'
+EMAIL_HOST_PASSWORD = 'password'
+EMAIL_FROM_ADDRESS = 'do-not-reply-ODM2-Admin@cuahsi.org'
+RECAPTCHA_PUBLIC_KEY = 'googlerecaptchakey'
+RECAPTCHA_PRIVATE_KEY = 'googlerecaptchaprivatekey'
+EMAIL_USE_TLS = True
+EMAIL_PORT = 123
+""" EMAIL CONFIGURATION """
+
+
+""" DATABASE CONFIGURATION """
+DATABASES = {
+    'default': {
+        'ENGINE': 'django.contrib.gis.db.backends.postgis',
+        'NAME': 'odm2_db',
+        'USER': 'postgres',
+        'PASSWORD': 'test',
+        'HOST': 'localhost',
+        'PORT': '5432',
+        'OPTIONS': {
+            'options': '-c search_path=public,admin,odm2,odm2extra'
+        }
+    }
+}
+""" END DATABASE CONFIGURATION """
+
+
+""" MAP CONFIGURATION """
+MAP_CONFIG = {
+    "lat": 0,
+    "lon": 0,
+    "zoom": 2,
+    "cluster_sites": False,
+    "time_series_months": 3,
+    "MapBox": {
+      "access_token": 'mapboxAccessToken'
+    },
+    "result_value_processing_levels_to_display": [1, 2, 3],
+    "feature_types": ['Excavation', 'Field area', 'Weather station', 
+    'Ecological land classification', 'Observation well', 'Site','Stream gage','Transect', 'Profile','Specimen']
+}
+""" END MAP CONFIGURATION """
+
+
+""" DATA DISCLAIMER CONFIGURATION """
+DATA_DISCLAIMER = {
+    "text" : "Add a link discribing where your data come from",
+    "linktext" : "The name of my site",
+    "link" : "http://mysiteswegpage.page/"
+
+}
+""" END DATA DISCLAIMER CONFIGURATION """

docker/entrypoint.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+set -e
+
+cmd="$1"
+
+service postgresql start
+
+until su - postgres -c "psql -U postgres -w -c '\l'"; do
+  >&2 echo "Postgres is unavailable - sleeping"
+  sleep 10
+done
+
+>&2 echo "Postgres is up - executing command"
+exec bash $cmd

docker/startup.sh

@@ -0,0 +1,11 @@
+#!/bin/bash
+
+echo "Activating environment..."
+source activate odm2adminenv
+
+echo "Building database..."
+su - postgres -c 'pg_restore -d odm2_db -1 -v "/db/odm2admindb.backup"'
+su - postgres -c "psql -U postgres -d postgres -c \"alter user postgres with password 'test';\""
+
+echo "Running server..."
+python /ODM2-Admin/manage.py runserver 0.0.0.0:8010

odm2admin/static/js/Map.js

@@ -104,12 +104,14 @@ createMarker = function (latlng, markerIcon, color, sfname,style_class,icon_str)
 	if(this.display_titles){
 		var iconDiv = new L.DivIcon({
 		className: style_class + ' awesome-marker leaflet-zoom-animated leaflet-interactive',
-		html: '<i class="fa '+ icon_str +' icon-white" aria-hidden="true"></i><p style="margin-top:20px;font-weight:bold;">'+sfname + '</p>',
+		html: '<i class="fa '+ icon_str +' icon-white" aria-hidden="true"></i><p ' +
+        'style="background-color:rgba(255,255,255,0.8);margin-top:25px;font-weight:bold;">'+sfname + '</p>'
 		});
 		marker = L.marker([latlng[0],latlng[1]], {
-        icon: iconDiv,
-        markerColor: color,
-        prefix: 'fa'
+            icon: iconDiv,
+            markerColor: color,
+            prefix: 'fa',
+            riseOnHover: true
 		});
 		return marker; 
 	}else{

odm2admin/views.py

@@ -538,7 +538,7 @@ def web_map(request):
         'site_header': admin.site.site_header, 'short_title': 'Map Locations',
         'basemaps': base_maps, 'sf_types': sf_types, 'selectedterms': selected_type,
         'selectedds': json.dumps(ds_selections), 'selectedtype': json.dumps(sftype_selections),
-        'urlpath': settings.URL_PATH
+        'urlpath': settings.BASE_URL
     }
     return render(request, 'mapdata.html', context)
 

templatesAndSettings/settings/base.py

@@ -23,9 +23,9 @@
 # SECRET_KEY.
 SECRET_KEY = 'myRanDom_Secret_Key'
 # Application definition
-CUSTOM_TEMPLATE_PATH = '/admin/{}/'.format(APP_NAME)
+BASE_URL = '' # Enter the base url in your APACHE SETTINGS. e.g. 'ODM2ADMIN/'
 
-URL_PATH = 'admin/'
+CUSTOM_TEMPLATE_PATH = '/{}{}/'.format(BASE_URL, APP_NAME)
 """ END PATH CONFIGURATION """
 
 
@@ -112,7 +112,9 @@
 # Absolute path to the directory static files should be collected to. Don't put
 # anything in this directory yourself; store your static files in apps' static/
 # subdirectories and in STATICFILES_DIRS.
-STATIC_ROOT = '{}/{}/static'.format(BASE_DIR, APP_NAME)
+# STATIC_ROOT = '{}/{}/static'.format(BASE_DIR, APP_NAME)
+STATIC_DIR = '{}/{}/static'.format(BASE_DIR, APP_NAME)
+STATICFILES_DIRS = [STATIC_DIR]
 # URL prefix for static files.
 STATIC_URL = '/static/'
 """ END STATIC FILE CONFIGURATION """
@@ -174,31 +176,31 @@
                 'class': 'config',
             },
             {
-                'url': '/' + URL_PATH + 'AddSensor.html',
+                'url': '/' + BASE_URL + 'AddSensor.html',
                 'app_name': '{}'.format(APP_NAME),
                 'title': 'Add Sensor Data',
                 'class': 'tool',
             },
             {
-                'url': '/' + URL_PATH + 'AddProfile.html',
+                'url': '/' + BASE_URL + 'AddProfile.html',
                 'app_name': '{}'.format(APP_NAME),
                 'title': 'Add Soil Profile Data',
                 'class': 'flag',
             },
             {
-                'url': '/' + URL_PATH + 'RecordAction.html',
+                'url': '/' + BASE_URL + 'RecordAction.html',
                 'app_name': '{}'.format(APP_NAME),
                 'title': 'Record an Action',
                 'class': 'notepad',
             },
             {
-                'url': '/' + URL_PATH + 'ManageCitations.html',
+                'url': '/' + BASE_URL + 'ManageCitations.html',
                 'app_name': '{}'.format(APP_NAME),
                 'title': 'Manage Citations',
                 'class': 'pencil',
             },
             {
-                'url': '/' + URL_PATH + 'chartIndex.html',
+                'url': '/' + BASE_URL + 'chartIndex.html',
                 'app_name': '{}'.format(APP_NAME),
                 'title': 'Graph My Data',
                 'class': 'monitor',