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@Noble-Lab

Noble Lab Department of Genome Sciences UW

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  1. casanovo casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Python 134 44

  2. HiCFoundation HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Python 16 2

  3. crema crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Python 12 1

  4. Carafe Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Java 11 1

  5. Pepper Pepper Public

    Peptide coefficient predictor

    Jupyter Notebook 9 2

  6. cascadia cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Python 9 5

Repositories

Showing 10 of 38 repositories
  • casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Noble-Lab/casanovo’s past year of commit activity
    Python 134 Apache-2.0 44 33 (3 issues need help) 6 Updated Apr 6, 2025
  • HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Noble-Lab/HiCFoundation’s past year of commit activity
    Python 16 Apache-2.0 2 0 0 Updated Apr 1, 2025
  • trans-C Public

    Identifying sets of loci that interact strongly in trans

    Noble-Lab/trans-C’s past year of commit activity
    Python 3 MIT 0 1 0 Updated Mar 31, 2025
  • Noble-Lab/FDRBench_manuscript’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 24, 2025
  • CellCycleNet Public

    Predicting cell cycle stage from 3D single-cell nuclear-stained images

    Noble-Lab/CellCycleNet’s past year of commit activity
    Python 8 MIT 0 0 0 Updated Mar 12, 2025
  • cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Noble-Lab/cascadia’s past year of commit activity
    Python 9 Apache-2.0 5 3 0 Updated Feb 14, 2025
  • Noble-Lab/HiCFoundation_paper’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Jan 30, 2025
  • Icebear Public
    Noble-Lab/Icebear’s past year of commit activity
    Python 3 Apache-2.0 0 0 0 Updated Dec 4, 2024
  • Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Noble-Lab/Carafe’s past year of commit activity
    Java 11 Apache-2.0 1 4 0 Updated Nov 30, 2024
  • Noble-Lab/multi-species-benchmark’s past year of commit activity
    Python 1 0 0 0 Updated Nov 8, 2024

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