QCAlign supports systematic post-processing of QUINT results (https://quint-workflow.readthedocs.io). It was developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences at the University of Oslo in Norway, in collaboration with the Kaczorowski Lab at the Jackson Laboratory in Bar Harbor, Maine, USA.
Currently QCAlign supports the Allen Mouse Brain Atlas CCFv3, 2015 and 2017 and the Waxholm Space Atlas of the Spraque Dawley Rat v2, v3 and v4.
QuickNII is developed by the Neural Systems Laboratory at the Institute of Basic Medical Sciences, University of Oslo, Norway. QuickNII was developed with support from the EBRAINS infrastructure, and funding from the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Framework Partnership Agreement No. 650003 (HBP FPA).
https://qcalign.readthedocs.io/
Gergely Csucs, Sharon Yates, Brianna Gurdon, Maja Puchades, Catherine Kaczorowski, Jan Bjaalie.
GNU General Public License version 3.
RRID:SCR_023088. Manuscript in preparation.
Allen Mouse Brain Atlas: © 2004 Allen Institute for Brain Science. Allen Mouse Brain Atlas. Available from: http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/.
Waxholm Space atlas of the Sprague Dawley rat brain version 2 , 3 and 4: RRID: SCR_017124; Papp et al., NeuroImage 97, 374-386, 2014; Papp et al., NeuroImage 105, 561–562, 2015; Kjonigsen et al., NeuroImage 108, 441-449, 2015; Osen et al., NeuroImage 199, 38-56, 2019; Kleven et al., in preparation.
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