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Bump rsync and other dockerfile lints #603

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merged 3 commits into from
Jan 16, 2025

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@pstjohn pstjohn commented Jan 15, 2025

Description

  • Attempts to fix https://ubuntu.com/security/CVE-2024-12084
  • provides (hopefully) better caching of uv steps to minimize load on pypi during docker builds
  • removes our manual tensorstore install after freeing this pin in NeMo

Type of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Refactor
  • Documentation update
  • Other (please describe):

CI Pipeline Configuration

Configure CI behavior by applying the relevant labels:

Note

By default, the notebooks validation tests are skipped unless explicitly enabled.

Usage

TODO: Add code snippet

Pre-submit Checklist

  • I have tested these changes locally
  • I have updated the documentation accordingly
  • I have added/updated tests as needed
  • All existing tests pass successfully

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Peter St. John <pstjohn@nvidia.com>
@pstjohn pstjohn changed the title Pstjohn/dockerfile changes Bump rsync, tensorstore, and other dockerfile lints Jan 15, 2025
@pstjohn pstjohn force-pushed the pstjohn/dockerfile-changes branch from bb4ec1a to 8c024af Compare January 15, 2025 17:26
@pstjohn pstjohn changed the title Bump rsync, tensorstore, and other dockerfile lints Bump rsync and other dockerfile lints Jan 15, 2025
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 89.59%. Comparing base (448f353) to head (9ff7e95).
Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #603   +/-   ##
=======================================
  Coverage   89.59%   89.59%           
=======================================
  Files          81       81           
  Lines        5044     5044           
=======================================
  Hits         4519     4519           
  Misses        525      525           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@pstjohn pstjohn enabled auto-merge January 15, 2025 23:22
@pstjohn pstjohn added this pull request to the merge queue Jan 16, 2025
Merged via the queue into NVIDIA:main with commit ff2be29 Jan 16, 2025
7 checks passed
@pstjohn pstjohn deleted the pstjohn/dockerfile-changes branch January 16, 2025 21:14
polinabinder1 pushed a commit that referenced this pull request Jan 22, 2025
### Description
* Attempts to fix https://ubuntu.com/security/CVE-2024-12084
* provides (hopefully) better caching of uv steps to minimize load on
pypi during docker builds
* ~removes our manual tensorstore install after freeing this pin in
NeMo~

### Type of changes
<!-- Mark the relevant option with an [x] -->

- [ ]  Bug fix (non-breaking change which fixes an issue)
- [ ]  New feature (non-breaking change which adds functionality)
- [ ]  Refactor
- [ ]  Documentation update
- [ ]  Other (please describe):

### CI Pipeline Configuration
Configure CI behavior by applying the relevant labels:

-
[SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci)
- Skip all continuous integration tests
-
[INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests)
- Execute notebook validation tests in pytest

> [!NOTE]
> By default, the notebooks validation tests are skipped unless
explicitly enabled.

### Usage
<!--- How does a user interact with the changed code -->
```python
TODO: Add code snippet
```

### Pre-submit Checklist
<!--- Ensure all items are completed before submitting -->

 - [ ] I have tested these changes locally
 - [ ] I have updated the documentation accordingly
 - [ ] I have added/updated tests as needed
 - [ ] All existing tests pass successfully

---------

Signed-off-by: Peter St. John <pstjohn@nvidia.com>
Signed-off-by: Polina Binder <pbinder@nvidia.com>
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4 participants