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Use model-cast-to-bfloat16 rather than AMP-to-bfloat16 for inference. #9198

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merged 2 commits into from
Jun 6, 2024

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@galv galv commented May 14, 2024

What does this PR do ?

I demonstrate, using transcribe_speech.py, that simply casting the entire model to bfloat16 gives about 15% higher performance than using automatic mixed precision. The reasons why are discussed in #9086

There are a few small modifications to our conformer encoder and multi head attention implementations to make this work. Basically, torch.float32 was unintentionally used at a few points.

I also disable updates to the batch norm statistics in this PR during inference. See the relevant comment in module.py.

Note that casting the preprocessor's input waveform to bfloat16 causes a serious accuracy degredation. I provide a warning about this. It is better to just do the preprocessor in float32, and then cast its output to bfloat16 (which is what I do).

I have verified that this works with Parakeet CTC 1.1B and Parakeet RNN-T 1.1B. I will upload a table showing WER and RTFx throughput when running transcribe_speech.py, using the new casting method and the old AMP method. RTFx improves by about 15%, and WER stays about the same.

This image demonstrates (1) the increase in RTFx across a range of datasets and (2) the fact that WER does not degrade.

image

Collection: ASR

Changelog

  • Add specific line by line info of high level changes in this PR.

Usage

  • See transcribe_speech.py. Note that several parts of the code use AMP rather than simply casting the model.

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@galv galv requested review from titu1994, pzelasko and nithinraok and removed request for titu1994 and pzelasko May 14, 2024 18:15
@github-actions github-actions bot added core Changes to NeMo Core ASR labels May 14, 2024
@galv galv requested a review from pzelasko May 14, 2024 18:15
examples/asr/transcribe_speech.py Show resolved Hide resolved
examples/asr/transcribe_speech.py Outdated Show resolved Hide resolved
sound = sf.SoundFile(item["audio_filepath"])
duration = sound.frames / sound.samplerate
item["duration"] = duration
print(json.dumps(item), file=durations_f, flush=True)
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why print is required here?

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It's not. I coped it from: https://github.com/NVIDIA/NeMo/pull/9198/files/9a928206ec297f0b2652f4c382883c3bb29fd8a3#diff-f7b768bed0ebc1145787134787f17cc8dfb0defbf8758c8cb759b96e39fbbec5R361

In fact, there is a subtle bug with using print(). Flushing at a new line is not guaranteed. So the code I linked to actually chops off the last few lines of a manifest file. That was one of the reasons why I took a while to get this PR up. FYI @pzelasko , since I think you worked on pre-sorting before.

I will change from using print() to simply do json.write or json.save or w/e as an update to this PR.

https://docs.python.org/3/library/functions.html#print

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I think I raised a concern wrt this print with @pzelasko during review but didnt think much of it. Let's just use json write or file.write as normal

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Indeed my bad; I forgot to add f.flush() at the end of line writing. f.write() would have the same issue. print is just fine IMO but if you want to change it I don't mind.

if item.get("duration") is None:
sound = sf.SoundFile(item["audio_filepath"])
duration = sound.frames / sound.samplerate
item["duration"] = duration
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soundfile reads full file when duration is not mentioned, is it chosen here for performance?

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We need to get the duration of the audio file if we want to sort by duration. Sorting by duration can speed you up by a factor of two or so, IIRC. (I have the real data if you want to see it.) I'm not sure if I want to keep the change. It turns out that simply loading these audio files serially just to get their duration is slower than actually transcribing the data, annoyingly...

The duration fields are all "null" for the dataset I used here: https://bc.ngc.nvidia.com/datasets/1618966

So I threw this shim code in.

It is probably better to just update the duration field and make a new version of that dataset.

And throw an exception when someone wants to sort by duration but there is no duration field.

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I like the second idea better. Rather not read a full file to get duration. Error out if sorting is necessary but duration isn't provided in any file.

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yeah reason I asked is, unfortunately reading and writing is where most of the time spent.

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It's more complicated than that: if the format has a header, such as WAV or FLAC, soundfile will only read the header unless you call .read() on that object. But if it's something like MP3, it may read the whole thing.

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galv commented May 15, 2024

FYI, the PR description has been updated to describe the benefit from using this mode of execution instead of AMP

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nemo/collections/asr/modules/audio_preprocessing.py Outdated Show resolved Hide resolved
@@ -348,7 +348,7 @@ def forward(self, x, pad_mask=None, cache=None):
x = self.pointwise_activation(x)

if pad_mask is not None:
x = x.float().masked_fill(pad_mask.unsqueeze(1), 0.0)
x = x.masked_fill(pad_mask.unsqueeze(1), 0.0)
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Hmm can we cast to appropriate dtype explicitly. Vahid added this for a particular reason which I forget

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@VahidooX can you comment on why you added this cast? It is immediately followed by self.depthwise_conv(x, cache=cache), which will end up casting the input x back down to fp16 when you run in automatic mixed precision. The only reason I can think of for why you might do this is if your cache is in float32, and adding a float16 value to the float32 cache caused a problem.

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Haven't heard back. Dropping this one.

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My bad, wasnt notified of ping. I am extremely wary of modifying any part of mha or relpos mha operations. I'd seriously like them to continue operating at fp32. Vahid worked a lot on this module, he has these explicit casts for a reason because he was unable to get stable training at all on fp16 and bf16 without these.

The goal of this PR was to affect only inference, this affects training so id request to revert any changes to any file concerning MHA or RelPosMHA

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A middle ground is the following - check for self.training - if true, then use the explicit fp32 casts here and below, otherwise perform no cast (and we anyway explicitly cast to fp16/bf16 so it wont make a difference in inference)

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I sent @galv the details on this casting. It is not used for train or inference in nemo. @borisfom added that, I guess to make it work with trt or onxx conversions. Let's check it out with Boris before dropping that.
Here is the PR for this specific one:
https://github.com/NVIDIA/NeMo/pull/3787/files

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Sure if that works without the cast, do remove it - both ONNX exporter and TRT went very far since then.

"""Reset and extend the positional encodings if needed."""
needed_size = 2 * length - 1
if hasattr(self, 'pe') and self.pe.size(1) >= needed_size:
return
# positions would be from negative numbers to positive
# positive positions would be used for left positions and negative for right positions
# fix this
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?

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I talk to myself in comments often, sorry.

if item.get("duration") is None:
sound = sf.SoundFile(item["audio_filepath"])
duration = sound.frames / sound.samplerate
item["duration"] = duration
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I like the second idea better. Rather not read a full file to get duration. Error out if sorting is necessary but duration isn't provided in any file.

sound = sf.SoundFile(item["audio_filepath"])
duration = sound.frames / sound.samplerate
item["duration"] = duration
print(json.dumps(item), file=durations_f, flush=True)
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I think I raised a concern wrt this print with @pzelasko during review but didnt think much of it. Let's just use json write or file.write as normal

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@github-actions github-actions bot removed the core Changes to NeMo Core label May 17, 2024
@galv galv force-pushed the dgalvez/fix-autocast-slowness-2 branch from fbf0a05 to a97048e Compare May 17, 2024 18:23
@galv galv force-pushed the dgalvez/fix-autocast-slowness-2 branch 2 times, most recently from 96cdaca to 82c607c Compare May 17, 2024 18:35
examples/asr/transcribe_speech.py Dismissed Show dismissed Hide dismissed
@galv galv force-pushed the dgalvez/fix-autocast-slowness-2 branch from 8e87d9d to bf017ac Compare May 17, 2024 20:20
@galv galv requested review from titu1994 and nithinraok May 17, 2024 20:22
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galv commented May 17, 2024

This is ready for another round of review. Unfortunately the black + isort change made a lot of noise. But basically I removed a lot of cruft. This PR basically does only three things now:

  1. Modify transcribe_speech.py to run using casting to float16/bfloat16 instead of AMP
  2. Modify transcribe_speech.py to output RTFx scores, using the calculate_rtfx=True config. It is set to false by default (but I wouldn't be opposed to setting it to True by default later for the sake of educating users about their throughput results).
  3. Make small changes to the positional encoding buffer and a call to masked_fill() to make sure that data is not accidentally casted up to float32.

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Minor comments, LGTM otherwise

nemo/collections/asr/parts/utils/transcribe_utils.py Outdated Show resolved Hide resolved
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revert the duration required field and also make sure to compute RTF when duration is provided, its not mandatory to provide duration

@galv galv requested a review from nithinraok May 29, 2024 18:28
@galv galv force-pushed the dgalvez/fix-autocast-slowness-2 branch from 0f5385d to f702953 Compare May 29, 2024 18:31
@galv galv dismissed nithinraok’s stale review May 29, 2024 18:32

All issues covered.

@galv galv added Run CICD and removed Run CICD labels May 29, 2024
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galv commented May 29, 2024

@nithinraok @pzelasko @titu1994 I think this change is good to go at this point.

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nithinraok previously approved these changes May 30, 2024
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LGTM!

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Overall everything looks good, apart from chages to MHA and RelPosMHA. Please see comments.

@@ -348,7 +348,7 @@ def forward(self, x, pad_mask=None, cache=None):
x = self.pointwise_activation(x)

if pad_mask is not None:
x = x.float().masked_fill(pad_mask.unsqueeze(1), 0.0)
x = x.masked_fill(pad_mask.unsqueeze(1), 0.0)
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My bad, wasnt notified of ping. I am extremely wary of modifying any part of mha or relpos mha operations. I'd seriously like them to continue operating at fp32. Vahid worked a lot on this module, he has these explicit casts for a reason because he was unable to get stable training at all on fp16 and bf16 without these.

The goal of this PR was to affect only inference, this affects training so id request to revert any changes to any file concerning MHA or RelPosMHA

)

global_attn_scores = global_attn_scores.view(batch_size * self.h, max_num_global_attn_indices, seq_len)

# compute global attn probs
global_attn_probs_float = nn.functional.softmax(global_attn_scores, dim=-1, dtype=torch.float32)
global_attn_probs_float = nn.functional.softmax(global_attn_scores, dim=-1)
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See above

@@ -348,7 +348,7 @@ def forward(self, x, pad_mask=None, cache=None):
x = self.pointwise_activation(x)

if pad_mask is not None:
x = x.float().masked_fill(pad_mask.unsqueeze(1), 0.0)
x = x.masked_fill(pad_mask.unsqueeze(1), 0.0)
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A middle ground is the following - check for self.training - if true, then use the explicit fp32 casts here and below, otherwise perform no cast (and we anyway explicitly cast to fp16/bf16 so it wont make a difference in inference)

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pzelasko commented Jun 4, 2024

Looks good to me!

galv added 2 commits June 5, 2024 14:48
This has been tested only for Parakeet-CTC-1.1B right now. This
problem certainly exists elsewhere.

Automatic mixed precision and inference do not play well together.

First, automatic mixed precision was created back when neural networks
were much simpler. In particular, they did not have softmax and layer
norm as frequent operations. In the era of transformers, softmax and
layer norm are very common. AMP will uncoditionally output fp32
outputs from these operations, even if their inputs are fp16. See
here: https://pytorch.org/docs/stable/amp.html#cuda-ops-that-can-autocast-to-float32

This is no longer necessary, now that layer norm does accumulation in
fp32 in pytorch, even if the input is fp16:
pytorch/pytorch#66707

Do infernece by casting model to bfloat16, not by using AMP.

Do feature preprocessing in float32 for accuracy. Warn if someone
tries to input a non-float32 tensor.

Always create the output in the type the rest of the model expects.

Sort manifests by duration.

Signed-off-by: Daniel Galvez <dgalvez@nvidia.com>
While we don't need this for accurate results in b/float16, this is a
safety precaution to make sure that training accuracy does not
regress.

Signed-off-by: Daniel Galvez <dgalvez@nvidia.com>
@galv galv force-pushed the dgalvez/fix-autocast-slowness-2 branch from 9e8dc25 to 2a6f156 Compare June 5, 2024 21:50
@galv galv added Run CICD and removed Run CICD labels Jun 5, 2024
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Thanks for the fixes !

@titu1994 titu1994 merged commit fc2e693 into NVIDIA:main Jun 6, 2024
130 checks passed
marcromeyn pushed a commit that referenced this pull request Jun 7, 2024
…#9198)

* Fix the "cast ping pong" problem when we run AMP inference.

This has been tested only for Parakeet-CTC-1.1B right now. This
problem certainly exists elsewhere.

Automatic mixed precision and inference do not play well together.

First, automatic mixed precision was created back when neural networks
were much simpler. In particular, they did not have softmax and layer
norm as frequent operations. In the era of transformers, softmax and
layer norm are very common. AMP will uncoditionally output fp32
outputs from these operations, even if their inputs are fp16. See
here: https://pytorch.org/docs/stable/amp.html#cuda-ops-that-can-autocast-to-float32

This is no longer necessary, now that layer norm does accumulation in
fp32 in pytorch, even if the input is fp16:
pytorch/pytorch#66707

Do infernece by casting model to bfloat16, not by using AMP.

Do feature preprocessing in float32 for accuracy. Warn if someone
tries to input a non-float32 tensor.

Always create the output in the type the rest of the model expects.

Sort manifests by duration.

Signed-off-by: Daniel Galvez <dgalvez@nvidia.com>

* Always cast softmax inputs to float32 when in training mode.

While we don't need this for accurate results in b/float16, this is a
safety precaution to make sure that training accuracy does not
regress.

Signed-off-by: Daniel Galvez <dgalvez@nvidia.com>

---------

Signed-off-by: Daniel Galvez <dgalvez@nvidia.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>
akoumpa added a commit that referenced this pull request Jun 10, 2024
…rategy (#9387)

* Integrating mcore's DistributedDataParallel into MegatronStrategy

Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Apply isort and black reformatting

Signed-off-by: marcromeyn <marcromeyn@users.noreply.github.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Apply ddp-hooks from pytorch only when needed

Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* bugfix if using mcore distOpt with sft (#9356)

* bugfix if using mcore distOpt

Signed-off-by: Alexandros Koumparoulis <akoumparouli@nvidia.com>

* Apply isort and black reformatting

Signed-off-by: akoumpa <akoumpa@users.noreply.github.com>

---------

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* fix typo infer_seq_lenght -> infer_seq_length (#9370)

Signed-off-by: Alexandros Koumparoulis <akoumparouli@nvidia.com>
Co-authored-by: Marc Romeyn <mromeijn@nvidia.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Rachitg/ag (#9083)

* Rachitg/ag (#9081)

* disable overlap for qkv

Signed-off-by: Rachit Garg <rachitg@login-eos01.eos.clusters.nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* bug fix

* bugfix

---------

Signed-off-by: Rachit Garg <rachitg@login-eos01.eos.clusters.nvidia.com>
Signed-off-by: Rachit Garg <rachitgarg91@gmail.com>
Co-authored-by: Rachit Garg <rachitg@login-eos01.eos.clusters.nvidia.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Apply isort and black reformatting

Signed-off-by: michal2409 <michal2409@users.noreply.github.com>

---------

Signed-off-by: Rachit Garg <rachitg@login-eos01.eos.clusters.nvidia.com>
Signed-off-by: Rachit Garg <rachitgarg91@gmail.com>
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Co-authored-by: Rachit Garg <rachitg@login-eos01.eos.clusters.nvidia.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Michal Futrega <mfutrega@nvidia.com>
Co-authored-by: michal2409 <michal2409@users.noreply.github.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Adding the original change made for label_models (#9377) (#9378)

Signed-off-by: Taejin Park <tango4j@gmail.com>
Co-authored-by: Taejin Park <tango4j@gmail.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Dgalvez/fix greedy batch strategy name r2.0.0rc0 (#9243) (#9253)

* Lazily warn about using greedy strategy instead of greedy_batch
strategy.

Previously, the warning would often run spuriously, since several
existing code paths simply call "change_decoding_strategy()" after
having first initialized a Module, rather than changing the config
before initializing the Module. This can be confusing.

The only problem I can see with this is that using logging inside a
forward() method might interfere with some compiler toolkits like
Torchscript or thunder.compile. Presumably it would be easy to add a
conditional statement to avoid this statement in a compiler context if
necessary.

Signed-off-by: Daniel Galvez <dgalvez@nvidia.com>
Co-authored-by: Daniel Galvez <galv@users.noreply.github.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Update README.rst (#9393)

Revised content per https://gitlab-master.nvidia.com/nemo-framework-tme/documentation/-/issues/25. Also removed reference to NIMs in LLMs and MMs Deployment and Optimization. It should be NVIDIA NeMo Microservices and not NIM. Removed  nemo:24.03.framework and nemo:24.01.speech in Docker Containers section and replaced with 24.05 . Please verify all changes.

Signed-off-by: jgerh <163925524+jgerh@users.noreply.github.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* a2a fix removed tp world size and group from init (#8944) (#8952)

Signed-off-by: Anmol Gupta <14880251+anmolgupt@users.noreply.github.com>
Co-authored-by: anmolgupt <14880251+anmolgupt@users.noreply.github.com>
Co-authored-by: Eric Harper <complex451@gmail.com>
Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Add config option for FP32 embedding grads (#8953)

* Add config option for FP32 embedding grads (#8946)

Signed-off-by: Tim Moon <tmoon@nvidia.com>

* Apply isort and black reformatting

Signed-off-by: ericharper <ericharper@users.noreply.github.com>

---------

Signed-off-by: Tim Moon <tmoon@nvidia.com>
Signed-off-by: ericharper <ericharper@users.noreply.github.com>
Co-authored-by: Tim Moon <4406448+timmoon10@users.noreply.github.com>
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Signed-off-by: Marc Romeyn <mromeijn@nvidia.com>

* Changes to enable CUDA graph for LLM (#8955)

* Changes to enable CUDA graph for LLM (#8751)

* Use next instead of get_batch

Signed-off-by: Vasudevan Rengasamy <vrengasamy@nvidia.com>

* CUDA graph changes

Signed-off-by: Vasudevan Rengasamy <vrengasamy@nvidia.com>

* Change to enable CG with weight caching

Signed-off-by: Vasudevan Rengasamy <vrengasamy@nvidia.com>

* Revert "Use next instead of get_batch"

This reverts commit 0021bb444cdd1b27674fc0cfea909c1a42475336.

Signed-off-by: Vasudevan Rengasamy <vrengasamy@nvidia.com>

* Copy jbaczek/mcore_parallel_state_api_change branch leaving out changes to nemo/export/quantize/quantizer.py

Signed-off-by: Jan Baczek <jbaczek@nvidia.com>
Signed-off-by: Vasudevan Rengasamy <vrengasamy@nvidia.com>

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janekl pushed a commit that referenced this pull request Jun 12, 2024
…#9198)

* Fix the "cast ping pong" problem when we run AMP inference.

This has been tested only for Parakeet-CTC-1.1B right now. This
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Automatic mixed precision and inference do not play well together.

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This is no longer necessary, now that layer norm does accumulation in
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pytorch/pytorch#66707

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janekl added a commit that referenced this pull request Jun 12, 2024
…rategy (#9387)

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JesusPaz pushed a commit to JesusPaz/NeMo that referenced this pull request Jun 18, 2024
…rategy (NVIDIA#9387)

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rohitrango pushed a commit to rohitrango/NeMo that referenced this pull request Jun 25, 2024
…NVIDIA#9198)

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rohitrango pushed a commit to rohitrango/NeMo that referenced this pull request Jun 25, 2024
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Previously, the warning would often run spuriously, since several
existing code paths simply call "change_decoding_strategy()" after
having first initialized a Module, rather than changing the config
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@ko3n1g ko3n1g mentioned this pull request Jul 18, 2024
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