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ClaraGenomicsAnalysis Release 0.2.0
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@tijyojwad tijyojwad released this 14 Aug 21:42
· 2527 commits to master since this release
v0.2.0
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Release v0.2.0 brings new features, APIs and performance improvements to the Clara Genomics Analysis SDK.

The following are the major additions to this release -

  1. CUDAPOA
  • New C++ API for creating CUDAPOA batches.
  • New Python API bindings for CUDAPOA in pyclaragenomics
  • New Python and C++ samples to guide usage of relevant APIs
  • Lower memory footprint batches, requiring less than 50% of earlier versions, allowing more POA groups to be computed within a batch.
  • Overall batched POA time down by ~20% on medium to large size batches (300-400 POA groups per batch).
  1. CUDAALIGNER
  • New Myers + Hirschberg implementation for global alignment, allowing for larger batches of longer sequences to be aligned on the GPU.
  1. SDK Improvements
  • New CUDA 9.0 support added to SDK
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