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Output predictions in structural space #8

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1-w opened this issue Aug 3, 2022 · 1 comment · Fixed by #11
Closed

Output predictions in structural space #8

1-w opened this issue Aug 3, 2022 · 1 comment · Fixed by #11
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@ravnoor
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enhancement New feature or request

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@1-w
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1-w commented Aug 3, 2022

Description

How can the internal coregistration via deepmask be reversed

Actual Behavior

Output is always normalized.

Possible Fix.

Allow a flag to translate predictions back to input space.
@ravnoor ravnoor self-assigned this Aug 3, 2022
@ravnoor ravnoor added the enhancement New feature or request label Aug 3, 2022
@ravnoor
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ravnoor commented Aug 3, 2022

Feature also requested by Mia.Mojica at uhn dot ca on 03/08/2022 via email:

a) store the transformations warping the original T1w and FLAIR images to MNI space during the registration stage and
b) invert these transformations to view the probability maps in native space

@1-w 1-w mentioned this issue Aug 4, 2022
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@ravnoor ravnoor linked a pull request Aug 4, 2022 that will close this issue
implement inverse transformation into input space #11
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implement inverse transformation into input space 1-w/deepFCD-1
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@ravnoor @1-w