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Flip atmos/memXXX to memXXX/atmos #1201

Merged
merged 6 commits into from
Jan 9, 2023
Merged

Flip atmos/memXXX to memXXX/atmos #1201

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9473a0e
flip memdir where obvious
aerorahul Dec 22, 2022
ea174a2
updates to earc. hpssgen is a mysterious mess
aerorahul Dec 22, 2022
e1e6e45
hack to disable gdaspostanl on the first half cycle
aerorahul Dec 22, 2022
539cede
remove COMPONENT=atmos in the _atmos_ jobs
aerorahul Dec 23, 2022
97cf9e6
remove redundant if-blocks
aerorahul Jan 3, 2023
80c4fed
include bugfix from @XianwuXue-NOAA.
aerorahul Jan 4, 2023
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19 changes: 9 additions & 10 deletions jobs/JGDAS_ATMOS_ANALYSIS_DIAG
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Original file line number Diff line number Diff line change
Expand Up @@ -51,7 +51,6 @@ status=$?
##############################################
export CDATE=${CDATE:-${PDY}${cyc}}
export CDUMP=${CDUMP:-${RUN:-"gfs"}}
export COMPONENT="atmos"
export DO_CALC_ANALYSIS=${DO_CALC_ANALYSIS:-"YES"}


Expand All @@ -72,19 +71,19 @@ export ASUFFIX=${ASUFFIX:-${SUFFIX}}


if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
fi
mkdir -m 775 -p ${COMOUT}
# COMIN_GES and COMIN_GES_ENS are used in script
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"


export ATMGES="${COMIN_GES}/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
22 changes: 11 additions & 11 deletions jobs/JGDAS_ATMOS_CHGRES_FORENKF
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Expand Up @@ -72,21 +72,21 @@ export ASUFFIX=${ASUFFIX:-${SUFFIX}}


if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT_ENS=${COMOUT_ENS:-${ROTDIR}/enkfgdas.${PDY}/${cyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT_ENS=${COMOUT_ENS:-${ROTDIR}/enkfgdas.${PDY}/${cyc}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT_ENS="${ROTDIR}/enkfgdas.${PDY}/${cyc}/${COMPONENT}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMOUT_ENS="${ROTDIR}/enkfgdas.${PDY}/${cyc}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
fi
mkdir -m 775 -p ${COMOUT}
# COMIN_GES and COMIN_GES_ENS are used in script
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"

###############################################################
# Run relevant script
Expand Down
8 changes: 4 additions & 4 deletions jobs/JGDAS_ATMOS_GLDAS
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Expand Up @@ -81,11 +81,11 @@ export USHgldas=${USHgldas:-${HOMEgldas}/ush}
export PARA_CONFIG=${HOMEgfs}/parm/config/config.gldas

if [[ "${RUN_ENVIR}" = "nco" ]]; then
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
else
export COMIN="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
fi
if [[ ! -d ${COMOUT} ]]; then
mkdir -p "${COMOUT}"
Expand Down
4 changes: 2 additions & 2 deletions jobs/JGDAS_ENKF_DIAG
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Expand Up @@ -85,9 +85,9 @@ fi
# COMIN_GES, COMIN_ANL COMIN_GES_ENS, and COMOUT are used in script
COMIN_GES_CTL="${ROTDIR}/gdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_ANL="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"
export COMIN_GES=${COMIN_GES_ENS}
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"


export ATMGES_ENSMEAN="${COMIN_GES_ENS}/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
16 changes: 8 additions & 8 deletions jobs/JGDAS_ENKF_ECEN
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Expand Up @@ -81,18 +81,18 @@ export GSUFFIX=${GSUFFIX:-${SUFFIX}}
export ASUFFIX=${ASUFFIX:-${SUFFIX}}

if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
fi

# COMIN, COMIN_ENS and COMIN_GES_ENS are used in script
export COMIN="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_ENS="${ROTDIR}/enkf${CDUMP_ENKF}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT_ENS="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_ENS="${ROTDIR}/enkf${CDUMP_ENKF}.${PDY}/${cyc}"
export COMOUT_ENS="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"
export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}"


###############################################################
Expand Down
2 changes: 1 addition & 1 deletion jobs/JGDAS_ENKF_FCST
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Expand Up @@ -61,7 +61,7 @@ export rCDUMP="gdas"
export CASE=${CASE_ENKF}

# COMOUT is used in script
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"


# Forecast length for EnKF forecast
Expand Down
4 changes: 2 additions & 2 deletions jobs/JGDAS_ENKF_POST
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Expand Up @@ -62,8 +62,8 @@ export GFS_NCIO=${GFS_NCIO:-"YES"}
export PREFIX="${CDUMP}.t${cyc}z."

# COMIN, COMOUT are used in script
export COMIN="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"


export LEVS=$((LEVS-1))
Expand Down
4 changes: 2 additions & 2 deletions jobs/JGDAS_ENKF_SELECT_OBS
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Expand Up @@ -85,9 +85,9 @@ fi
# COMIN_GES, COMIN_ANL COMIN_GES_ENS, and COMOUT are used in script
COMIN_GES_CTL="${ROTDIR}/gdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_ANL="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"
export COMIN_GES=${COMIN_GES_ENS}
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"


export ATMGES_ENSMEAN="${COMIN_GES_ENS}/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
18 changes: 9 additions & 9 deletions jobs/JGDAS_ENKF_SFC
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Expand Up @@ -81,19 +81,19 @@ export GSUFFIX=${GSUFFIX:-${SUFFIX}}
export ASUFFIX=${ASUFFIX:-${SUFFIX}}

if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
fi

# COMIN, COMIN_ENS and COMIN_GES_ENS are used in script
export COMIN="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_ENS="${ROTDIR}/enkf${CDUMP_ENKF}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT_ENS="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
export COMIN_ENS="${ROTDIR}/enkf${CDUMP_ENKF}.${PDY}/${cyc}"
export COMOUT_ENS="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"
export COMIN_GES_ENS="${ROTDIR}/enkf${GDUMP}.${gPDY}/${gcyc}"


###############################################################
Expand Down
4 changes: 2 additions & 2 deletions jobs/JGDAS_ENKF_UPDATE
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Expand Up @@ -69,8 +69,8 @@ export GSUFFIX=${GSUFFIX:-${SUFFIX}}


# COMIN_GES_ENS and COMOUT_ANL_ENS are used in script
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMOUT_ANL_ENS="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"
export COMOUT_ANL_ENS="${ROTDIR}/enkf${CDUMP}.${PDY}/${cyc}"


###############################################################
Expand Down
4 changes: 2 additions & 2 deletions jobs/JGDAS_GLOBAL_OCEAN_ANALYSIS_PREP
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Expand Up @@ -69,12 +69,12 @@ export APREFIX="${CDUMP}.t${cyc}z."
export GSUFFIX=${GSUFFIX:-${SUFFIX}}
export ASUFFIX=${ASUFFIX:-${SUFFIX}}

export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${CDUMP}.${PDY}/${cyc}/ocean}

mkdir -p "${COMOUT}"

# COMIN_GES and COMIN_GES_ENS are used in script
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/ocean"

###############################################################
# Run relevant script
Expand Down
18 changes: 9 additions & 9 deletions jobs/JGLOBAL_ATMOS_ANALYSIS
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Expand Up @@ -74,19 +74,19 @@ export ASUFFIX=${ASUFFIX:-${SUFFIX}}


if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
fi
mkdir -m 775 -p ${COMOUT}
# COMIN_GES and COMIN_GES_ENS are used in script
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"


export ATMGES="${COMIN_GES}/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
18 changes: 9 additions & 9 deletions jobs/JGLOBAL_ATMOS_ANALYSIS_CALC
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Expand Up @@ -72,19 +72,19 @@ export ASUFFIX=${ASUFFIX:-${SUFFIX}}


if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_OBS=${COMIN_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-$(compath.py ${envir}/obsproc/${obsproc_ver})/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_OBS="${DMPDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_GES_OBS="${DMPDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
fi
mkdir -m 775 -p ${COMOUT}
# COMIN_GES and COMIN_GES_ENS are used in script
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"


export ATMGES="${COMIN_GES}/${GPREFIX}atmf006${GSUFFIX}"
Expand Down
15 changes: 13 additions & 2 deletions jobs/JGLOBAL_ATMOS_POST
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Expand Up @@ -62,6 +62,17 @@ export CDUMP=${CDUMP:-${RUN:-"gfs"}}
export COMPONENT="atmos"


##############################################
# TODO: Remove this egregious HACK
##############################################
if [[ "${SDATE:-}" = "${CDATE}" ]]; then
if [[ ${post_times} = "anl" ]]; then
echo "No offline post-processing in the first half cycle for analysis"
exit 0
fi
fi


##############################################
# Begin JOB SPECIFIC work
##############################################
Expand All @@ -72,8 +83,8 @@ export FIXCRTM=${CRTM_FIX:-${HOMECRTM}/fix}
export PARMpost=${PARMpost:-${HOMEgfs}/parm/post}
export INLINE_POST=${WRITE_DOPOST:-".false."}

export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}

# shellcheck disable=SC2174
[[ ! -d "${COMOUT}" ]] && mkdir -m 775 -p "${COMOUT}"
Expand Down
5 changes: 2 additions & 3 deletions jobs/JGLOBAL_ATMOS_POST_MANAGER
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Expand Up @@ -55,7 +55,6 @@ status=$?
####################################
export NET=${NET:-gfs}
export RUN=${RUN:-gfs}
export COMPONENT="atmos"


####################################
Expand All @@ -78,8 +77,8 @@ export USHgfs=${HOMEgfs:-${HOMEgfs}/ush}
export EXT_FCST=NO

export ROTDIR=${ROTDIR:-${COMROOT:?}/${NET}/${envir}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}


########################################################
Expand Down
14 changes: 7 additions & 7 deletions jobs/JGLOBAL_ATMOS_SFCANL
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Expand Up @@ -73,19 +73,19 @@ export ASUFFIX=${ASUFFIX:-${SUFFIX}}


if [ ${RUN_ENVIR} = "nco" -o ${ROTDIR_DUMP:-NO} = "YES" ]; then
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_OBS=${COMIN_OBS:-${ROTDIR}/${RUN}.${PDY}/${cyc}/${COMPONENT}}
export COMIN_GES_OBS=${COMIN_GES_OBS:-${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}}
export COMIN=${COMIN:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMOUT=${COMOUT:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_OBS=${COMIN_OBS:-${ROTDIR}/${RUN}.${PDY}/${cyc}/atmos}
export COMIN_GES_OBS=${COMIN_GES_OBS:-${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos}
else
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/${COMPONENT}"
export COMOUT="${ROTDIR}/${CDUMP}.${PDY}/${cyc}/atmos"
export COMIN_OBS="${DMPDIR}/${CDATE}/${CDUMP}"
export COMIN_GES_OBS="${DMPDIR}/${GDATE}/${GDUMP}"
fi
mkdir -m 775 -p ${COMOUT}
# COMIN_GES and COMIN_GES_ENS are used in script
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}/${COMPONENT}"
export COMIN_GES="${ROTDIR}/${GDUMP}.${gPDY}/${gcyc}/atmos"
export COMIN_GES_ENS="${ROTDIR}/enkfgdas.${gPDY}/${gcyc}"


export ATMGES="${COMIN_GES}/${GPREFIX}atmf006${GSUFFIX}"
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2 changes: 1 addition & 1 deletion scripts/exgdas_atmos_chgres_forenkf.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,7 @@ ATMF06ENS=${ATMF06ENS:-${COMOUT}/${APREFIX}atmf006.ensres${ASUFFIX}}
ATMF07ENS=${ATMF07ENS:-${COMOUT}/${APREFIX}atmf007.ensres${ASUFFIX}}
ATMF08ENS=${ATMF08ENS:-${COMOUT}/${APREFIX}atmf008.ensres${ASUFFIX}}
ATMF09ENS=${ATMF09ENS:-${COMOUT}/${APREFIX}atmf009.ensres${ASUFFIX}}
ATMFCST_ENSRES=${ATMFCST_ENSRES:-${COMOUT_ENS}/mem001/${APREFIX}atmf006${ASUFFIX}}
ATMFCST_ENSRES=${ATMFCST_ENSRES:-${COMOUT_ENS}/mem001/atmos/${APREFIX}atmf006${ASUFFIX}}

# Set script / GSI control parameters
DOHYBVAR=${DOHYBVAR:-"NO"}
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