Add MOS jobs to rocoto mesh (#2148)

Create separate jobs for GFS MOS - extracted from now-retired vrfy job

Refs #2068

env/WCOSS2.env

@@ -283,4 +283,12 @@ elif [[ "${step}" = "waveawipsbulls" ]]; then
 
     unset PERL5LIB
 
+elif [[ "${step:0:3}" = "mos" ]]; then
+
+    export FORT_BUFFERED=TRUE
+
+    if [[ "${step}" = "mos_stn_prep" ]]; then
+       export OMP_PROC_BIND=true
+    fi
+
 fi

jobs/rocoto/mos_ext_grd_fcst.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_ext_grd_fcst"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_grd_fcst" -c "base mos_ext_grd_fcst"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_GRD_FORECAST"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_ext_grd_prdgen.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_ext_grd_prdgen"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_grd_prdgen" -c "base mos_ext_grd_prdgen"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_GRD_PRDGEN"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_ext_grd_prep.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_ext_grd_prep"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_grd_prep" -c "base mos_ext_grd_prep"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_GRD_PREP"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_ext_stn_fcst.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_ext_stn_fcst"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_stn_fcst" -c "base mos_ext_stn_fcst"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_STN_FORECAST"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_ext_stn_prdgen.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_ext_stn_prdgen"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_stn_prdgen" -c "base mos_ext_stn_prdgen"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_STN_PRDGEN"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_ext_stn_prep.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_ext_stn_prep"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_ext_stn_prep" -c "base mos_ext_stn_prep"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_EXT_STN_PREP"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_grd_fcst.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_grd_fcst"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_grd_fcst" -c "base mos_grd_fcst"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_GRD_FORECAST"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_grd_prdgen.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_grd_prdgen"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_grd_prdgen" -c "base mos_grd_prdgen"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_GRD_PRDGEN"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_grd_prep.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_grd_prep"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_grd_prep" -c "base mos_grd_prep"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_GRD_PREP"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_stn_fcst.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_stn_fcst"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_stn_fcst" -c "base mos_stn_fcst"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_STN_FORECAST"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_stn_prdgen.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_stn_prdgen"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_stn_prdgen" -c "base mos_stn_prdgen"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_STN_PRDGEN"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_stn_prep.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_stn_prep"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_stn_prep" -c "base mos_stn_prep"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_STN_PREP"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_wx_ext_prdgen.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_wx_ext_prdgen"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_wx_ext_prdgen" -c "base mos_wx_ext_prdgen"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_WX_EXT_PRDGEN"
+status=$?
+
+exit "${status}"

jobs/rocoto/mos_wx_prdgen.sh

@@ -0,0 +1,25 @@
+#! /usr/bin/env bash
+
+source "${HOMEgfs}/ush/preamble.sh"
+
+###############################################################
+# Source FV3GFS workflow modules
+source "${HOMEgfs}/ush/load_fv3gfs_modules.sh"
+status=$?
+(( status != 0 )) && exit "${status}"
+
+export job="mos_wx_prdgen"
+export jobid="${job}.$$"
+
+###############################################################
+# Source jjob_header before invoking external JJOB
+
+source "${HOMEgfs}/ush/jjob_header.sh" -e "mos_wx_prdgen" -c "base mos_wx_prdgen"
+
+###############################################################
+# Execute the JJOB
+
+"${HOMEgfs_mos}/jobs/JGFSMOS_WX_PRDGEN"
+status=$?
+
+exit "${status}"

modulefiles/module_base.wcoss2.lua

@@ -38,4 +38,7 @@ load(pathJoin("prepobs", os.getenv("prepobs_run_ver")))
 prepend_path("MODULEPATH", pathJoin("/lfs/h2/emc/global/save/emc.global/git/Fit2Obs/v" .. os.getenv("fit2obs_ver"), "modulefiles"))
 load(pathJoin("fit2obs", os.getenv("fit2obs_ver")))
 
+append_path("MODULEPATH", pathJoin("/apps/ops/prod/nco/models/modulefiles"))
+load(pathJoin("mos_shared", os.getenv("mos_shared_ver")))
+
 whatis("Description: GFS run environment")

parm/config/gfs/config.base.emc.dyn

@@ -64,6 +64,7 @@ export DO_GENESIS_FSU="NO" # Cyclone genesis verification (FSU)
 export DO_VERFOZN="YES"    # Ozone data assimilation monitoring
 export DO_VERFRAD="YES"    # Radiance data assimilation monitoring
 export DO_VMINMON="YES"    # GSI minimization monitoring
+export DO_MOS="NO"         # GFS Model Output Statistics - Only supported on WCOSS2
 
 # NO for retrospective parallel; YES for real-time parallel
 #  arch.sh uses REALTIME for MOS.  Need to set REALTIME=YES