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@NIGMS

National Institute of General Medical Sciences

Increasing our understanding of biological processes and lays the foundation for advances in disease diagnosis, treatment, and prevention.

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  1. NIGMS-Sandbox NIGMS-Sandbox Public

    Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

    Shell 69 17

  2. DNA-Methylation-Sequencing-Analysis-with-WGBS DNA-Methylation-Sequencing-Analysis-with-WGBS Public

    Jupyter Notebook 12 3

  3. Introduction-to-Data-Science-for-Biology Introduction-to-Data-Science-for-Biology Public

    Python-based machine learning and data science module from SFSU developed for the NIGMS Sandbox project

    Jupyter Notebook 7 6

  4. Integrating-Multi-Omics-Datasets Integrating-Multi-Omics-Datasets Public

    Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

    HTML 7 2

  5. ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis Public

    ATAC-seq and scATAC-seq module developed by the University of Nebraska Medical Center

    Jupyter Notebook 7 5

  6. Biomedical-Imaging-Analysis-using-AI-ML-Approaches Biomedical-Imaging-Analysis-using-AI-ML-Approaches Public

    Machine Learning module for cloud-based analyses developed as part of the NIGMS Sandbox Project

    Jupyter Notebook 6 4

Repositories

Showing 10 of 22 repositories
  • NIGMS/Metagenomics-Analysis-of-Biofilm-Microbiome’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 4 0 0 Updated Apr 9, 2025
  • ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis Public

    ATAC-seq and scATAC-seq module developed by the University of Nebraska Medical Center

    NIGMS/ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis’s past year of commit activity
    Jupyter Notebook 7 5 0 2 Updated Apr 8, 2025
  • NIGMS-Sandbox Public

    Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

    NIGMS/NIGMS-Sandbox’s past year of commit activity
    Shell 69 17 0 0 Updated Apr 8, 2025
  • NIGMS/NIGMS-Sandbox-Repository-Template’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Apr 7, 2025
  • NIGMS/DNA-Methylation-Sequencing-Analysis-with-WGBS’s past year of commit activity
    Jupyter Notebook 12 3 0 0 Updated Apr 7, 2025
  • RNA-Seq-Differential-Expression-Analysis Public

    RNAseq workflow run using Snakemake on Google Cloud Platform, developed as part of the NIH NIGMS Sandbox

    NIGMS/RNA-Seq-Differential-Expression-Analysis’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Apr 2, 2025
  • Consensus-Pathway-Analysis-in-the-Cloud Public

    Consensus pathway analysis module developed by the University of Nevada at Reno

    NIGMS/Consensus-Pathway-Analysis-in-the-Cloud’s past year of commit activity
    HTML 1 3 0 0 Updated Apr 2, 2025
  • Analysis-of-Biomedical-Data-for-Biomarker-Discovery Public

    R-based module that uses machine learning in biomarker discovery

    NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery’s past year of commit activity
    HTML 1 6 0 0 Updated Apr 2, 2025
  • Integrating-Multi-Omics-Datasets Public

    Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

    NIGMS/Integrating-Multi-Omics-Datasets’s past year of commit activity
    HTML 7 2 0 0 Updated Mar 21, 2025
  • Introduction-to-Data-Science-for-Biology Public

    Python-based machine learning and data science module from SFSU developed for the NIGMS Sandbox project

    NIGMS/Introduction-to-Data-Science-for-Biology’s past year of commit activity
    Jupyter Notebook 7 6 0 0 Updated Mar 5, 2025

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