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NEUS 2.1.0
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@andybeet andybeet released this 12 Mar 17:41
v2.1.0
2d8d8c2
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Learn about vigilant mode.

Uses Atlantis codebase v6536

Summary

Contains baseline calibration of NEUSv2 such that it meets persistence and reasonability criteria as well as adequate sensitivity to fishing pressure. Include pull requests #115 to #223

Specific changes include:

  • New initial size-at-age & numbers & numbers-at-age
  • flagtempsensitive turned on with q10=2
  • full review of diet parameters and comparisons to stomach contents database
  • Fixed incorrect catch forcing by incorporating NAFO data and new comlandr updates
  • Updated physics to 2021 with GLORYS12V1 updates
  • All species either use Beverton-Holt or pupping recruitment (no constant catch)
  • General calibration of species mum, C, mL, mQ, BHalpha, BHbeta, and/or pPREY

Code changes

  • Improved the organization of R, data, and data-raw directories
  • Improved the performance of post-processing routines
  • Creation of batch processing routines
  • Scripts for creating and analyzing fishing sensitivity scenarios
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