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Fix data download precourse
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jlorent committed Mar 4, 2024
1 parent 8b034fe commit f33a07c
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions home_precourse.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -420,10 +420,12 @@ cd ~/
conda activate nbis-workshop-rnaseq
```

Then you can simply run the `wget` command below to download the whole data for the course. This will take a long time since files are quite big.
Then you can simply run the `curl` command below to download the whole data for the course. This will take a long time since files are quite big.

```{sh,eval=FALSE,chunk.title=TRUE}
wget -r -nH --cut-dirs=2 --no-parent --reject="index.html*" --reject "RNAseq.tar.gz" https://export.uppmax.uu.se/uppstore2017171/workshops/RNAseq
curl https://export.uppmax.uu.se/uppstore2017171/workshops/RNAseq.2024.tar -o RNAseq.2024.tar
tar -xf RNAseq.2024.tar
```

After downloading, you will have a folder
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