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John Sundh edited this page Nov 25, 2020
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Welcome to the contigtax wiki!
contigtax assigns taxonomy to contigs/ORFs using diamond blastx/blastp against a protein database (currently contigtax supports download/build of uniref50, uniref90, uniref100 and the nr database) but any protein database can be used as long as protein identifiers can be mapped to NCBI taxonomy ids.