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Make it possible to extract proteins for certain taxa before building database #2

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johnne opened this issue Feb 15, 2019 · 0 comments
Open

Make it possible to extract proteins for certain taxa before building database #2

johnne opened this issue Feb 15, 2019 · 0 comments
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enhancement New feature or request

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johnne commented Feb 15, 2019

After the reformatting (or during, if working with the uniref databases) it should be possible to extract only proteins matching a certain taxon, say only Bacteria. This could be done on the command line with --taxlimit superkingdom:Bacteria for instance or --taxlimit superkingdom Bacteria Archaea
@johnne johnne added the enhancement New feature or request label Feb 15, 2019
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