This repository contains files and scripts for the ABC phenomics project. The resulting manuscript is titled "Quantifying Apple Diversity: a phenomic characterization of Canada's Apple Diversity".
Contact: Sophie Watts (sophie.watts@dal.ca)
data cleaning: script containing the code for data curation.
main data analysis: script containing the code for the data analysis and production of the main figures for the manuscript.
supplemental data analysis: script containing the code for the supplemental data analysis and production of supplemental figures and tables.
2016 2017 pheno table: file with the full phenotype names for the 2016 and 2017 data and their respective units.
20190322 final all abc phenos: table containing the fruit quality and phenology trait measurements from 2016 and 2017.
20200204 abc pop info: file contaning cultivar names, apple-IDs, accession numbers for accessions in the ABC.
20200305 time ripen 2017: time to ripen data from 2017.
20201102 meta data: file containing raw meta data for accessions in the ABC. This file is cleaned up in the "data cleaning" script found in the source folder.
pheno meta data: output file created from the data cleaning script and is the curated file of phenotypic and meta data used for all analyses (this is the same file as supp table 1).
supp tables: Supplemental tables for the manuscript.
supp figures: Supplemental figures for the manuscript.
main figures: Main figures for the manuscript.