Skip to content
@MetabolicEngineeringGroupCBMA

Metabolic Engineering Group at CBMA

This are repositories related to the MEC group at CBMA

Pinned Loading

  1. ypk-xylose-pathways ypk-xylose-pathways Public

    Pereira, F., Azevedo, F., Parachin, N. S., Hahn-Hägerdal, B., Gorwa-Grauslund, M. F., & Johansson, B. (2016). Yeast Pathway Kit: A Method for Metabolic Pathway Assembly with Automatically Simulated…

    HTML 1

  2. Cunha_et_al_2017 Cunha_et_al_2017 Public

    Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Imp…

    Jupyter Notebook 1

  3. dDEL dDEL Public

    Silva, P. C., Domingues, L., Collins, T., Oliveira, R., & Johansson, B. (2018). Quantitative assessment of DNA damage in the industrial ethanol production strain Saccharomyces cerevisiae PE-2. FEMS…

    Jupyter Notebook

  4. Silva_et_al_2020 Silva_et_al_2020 Public

    Silva, Paulo César, Javier A. Ceja-Navarro, Flávio Azevedo, Ulas Karaoz, Eoin L. Brodie, and Björn Johansson. 2021. “A Novel D-Xylose Isomerase from the Gut of the Wood Feeding Beetle Odontotaenius…

    HTML

  5. pydna-examples pydna-examples Public

    Jupyter notebooks and data files that demonstrates how pydna can be used to simulate and document cloning.

    HTML 3

  6. pydna_template pydna_template Public template

    This is a template repository for a pydna documentation and simulation project.

    Jupyter Notebook 1

Repositories

Showing 10 of 19 repositories
  • Cunha_et_al_2017 Public

    Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Importance of yeast chassis linked to process conditions. Bioresource Technology, 227, 24–34.

    MetabolicEngineeringGroupCBMA/Cunha_et_al_2017’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Feb 22, 2025
  • public-sequences Public

    Collection of plasmid sequences

    MetabolicEngineeringGroupCBMA/public-sequences’s past year of commit activity
    0 0 0 0 Updated Feb 6, 2025
  • YeastPathwayKit Public

    Yeast pathway kit promoter and terminator vectors and other related public information. Do not put secret information here.

    MetabolicEngineeringGroupCBMA/YeastPathwayKit’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Nov 8, 2024
  • ypk-xylose-pathways Public

    Pereira, F., Azevedo, F., Parachin, N. S., Hahn-Hägerdal, B., Gorwa-Grauslund, M. F., & Johansson, B. (2016). Yeast Pathway Kit: A Method for Metabolic Pathway Assembly with Automatically Simulated Executable Documentation. ACS Synthetic Biology, 5(5), 386–394.

    MetabolicEngineeringGroupCBMA/ypk-xylose-pathways’s past year of commit activity
    HTML 1 BSD-3-Clause 0 0 0 Updated Apr 8, 2024
  • pydna-examples Public

    Jupyter notebooks and data files that demonstrates how pydna can be used to simulate and document cloning.

    MetabolicEngineeringGroupCBMA/pydna-examples’s past year of commit activity
    HTML 3 BSD-3-Clause 0 0 0 Updated Mar 5, 2024
  • MetabolicEngineeringGroupCBMA.github.io Public

    This is our group wiki.

    MetabolicEngineeringGroupCBMA/MetabolicEngineeringGroupCBMA.github.io’s past year of commit activity
    1 0 0 0 Updated Jan 30, 2024
  • old_site Public

    This is our group website https://metabolicengineeringgroupcbma.github.io/

    MetabolicEngineeringGroupCBMA/old_site’s past year of commit activity
    1 0 0 0 Updated Jan 27, 2024
  • Pozdniakova_et_al_2023 Public

    Supplementary data for Pozdniakova 2023

    MetabolicEngineeringGroupCBMA/Pozdniakova_et_al_2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 22, 2023
  • Silva_et_al_2022 Public
    MetabolicEngineeringGroupCBMA/Silva_et_al_2022’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 9, 2022
  • pydna_template Public template

    This is a template repository for a pydna documentation and simulation project.

    MetabolicEngineeringGroupCBMA/pydna_template’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 9, 2022
View all repositories

Top languages

Loading…

Most used topics

Loading…