Merge pull request #200 from Merck/housekeeping

Fix typos and update URL
Merck · Oct 12, 2023 · 116d6b7 · 116d6b7
2 parents c762257 + fba3381
commit 116d6b7
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diff --git a/NEWS.md b/NEWS.md
@@ -31,7 +31,7 @@
 ## Improvements
 
 * Improve grammar and style for the main vignette (@howardbaek, #144).
-* Add libreoffice 7.4 and 7.5 support (#156).
+* Add LibreOffice 7.4 and 7.5 support (#156).
 * Add citation details (#155).
 
 # r2rtf 1.0.1
@@ -42,7 +42,7 @@
 
 ## Improvements
 
-* Add support for libreoffice 7.3 (#92).
+* Add support for LibreOffice 7.3 (#92).
 
 # r2rtf 1.0.0
 
@@ -100,7 +100,7 @@
 
 ## Improvements
 
-* Avoid specific libreoffice version (#68).
+* Avoid specific LibreOffice version (#68).
 
 # r2rtf 0.3.1
 

diff --git a/R/data.R b/R/data.R
@@ -46,11 +46,11 @@
 #' A dataset prepared by the Drug Information Association scientific working group
 #' to investigate a drug to reduce lower back pain.
 #'
-#' Definition of each variable can be found in \url{https://missingdata.lshtm.ac.uk/dia-working-group/}
+#' Definition of each variable can be found in \url{https://www.lshtm.ac.uk/research/centres-projects-groups/missing-data#dia-missing-data}
 #'
 #' @format A data frame with 831 rows and 6 variables.
 #'
-#' @source \url{https://missingdata.lshtm.ac.uk/dia-working-group/}
+#' @source \url{https://www.lshtm.ac.uk/research/centres-projects-groups/missing-data#dia-missing-data}
 "r2rtf_HAMD17"
 
 #' Within Group Results from an ANCOVA Model

diff --git a/R/rtf_rich_text.R b/R/rtf_rich_text.R
@@ -92,7 +92,7 @@ rtf_rich_text <- function(
     x = extracted$matches
   )
   if (length(extracted$tags) != length(extracted$matches)) {
-    stop("Length missmatch of tags found and matches found.", call. = FALSE)
+    stop("Length mismatch of tags found and matches found.", call. = FALSE)
   }
 
   # For each paired brace: extract the text to be wrapped with `rtf_text()`
@@ -102,7 +102,7 @@ rtf_rich_text <- function(
     x = extracted$matches
   )
   if (length(extracted$text) != length(extracted$matches)) {
-    stop("Length missmatch of extracted text found and matches found.", call. = FALSE)
+    stop("Length mismatch of extracted text found and matches found.", call. = FALSE)
   }
 
   # Validate that tags in text are reflected in the `themes` argument

diff --git a/man/r2rtf_HAMD17.Rd b/man/r2rtf_HAMD17.Rd
diff --git a/vignettes/design-pattern.Rmd b/vignettes/design-pattern.Rmd
@@ -139,8 +139,8 @@ head(iris) %>% # Step 1 Read in data frame
 ## RTF Encoding
 
 `rtf_encode()` wraps up internal functions in r2rtf package to translate all attributes attached to a data frame
-into [RTF syntax](http://www.snake.net/software/RTF/RTF-Spec-1.7.pdf).
-A good reference is [RTF pocket guide](https://www.oreilly.com/library/view/rtf-pocket-guide/9781449302047/).
+into [RTF syntax](https://web.archive.org/web/20221008045825/http://www.snake.net/software/RTF/RTF-Spec-1.7.pdf).
+A good reference is [RTF Pocket Guide](https://www.oreilly.com/library/view/rtf-pocket-guide/9781449302047/).
 
 All of the internal encoding functions in the r2rtf package start with a prefix `as_rtf_`.
 For a table, `r2rtf:::rtf_encode_table()` is used internally to translate attribute to RTF syntax by using
@@ -315,7 +315,7 @@ allowed to key in whatever is defined in dictionary for the rtf_ functions, or e
 r2rtf:::font_type()
 ```
 
-Superscripts, under scripts are taken care of by using `convert()` function to translate them into latex code and unicode. For example:
+Superscripts, under scripts are taken care of by using `convert()` function to translate them into LaTeX code and Unicode. For example:
 
 ```{r}
 r2rtf:::convert(c("^", "<="))

diff --git a/vignettes/example-basechar.Rmd b/vignettes/example-basechar.Rmd
@@ -73,11 +73,11 @@ bs_count <- function(data, grp, var,
 
 - Summarize continuous variable 
 ```{r}
-bs_continous <- function(data, grp, var,
-                         var_label = var,
-                         decimal = 1,
-                         total = TRUE,
-                         blank_row = FALSE) {
+bs_continuous <- function(data, grp, var,
+                          var_label = var,
+                          decimal = 1,
+                          total = TRUE,
+                          blank_row = FALSE) {
   data <- data %>% rename(grp = !!grp, var = !!var)
   coding <- levels(factor(data$grp))
   data <- data %>% mutate(grp = as.numeric(factor(grp)))
@@ -159,7 +159,7 @@ ana <- ana %>% mutate(
 bs_tb <- bind_rows(
   bs_count(ana, "TRT01AN", "SEX", "Gender"),
   bs_count(ana, "TRT01AN", "AGEGR1", "Age (Years)"),
-  bs_continous(ana, "TRT01AN", "AGE", "Age (Years)", blank_row = TRUE),
+  bs_continuous(ana, "TRT01AN", "AGE", "Age (Years)", blank_row = TRUE),
   bs_count(ana, "TRT01AN", "RACE", "Race")
 ) %>% mutate(
   var_label = factor(var_label, levels = c("Gender", "Age (Years)", "Race"))

diff --git a/vignettes/example-efficacy.Rmd b/vignettes/example-efficacy.Rmd
@@ -73,7 +73,7 @@ fmt_pval <- function(data, columns = "p.value", decimals = 3) {
 
 ### Step 2: ANCOVA analysis for HOMA data
 
-The data is available at <https://missingdata.lshtm.ac.uk/dia-working-group/example-data-sets/>.
+The data is available at <https://www.lshtm.ac.uk/research/centres-projects-groups/missing-data#dia-missing-data>.
 
 - Read in data and run ANCOVA model
 

diff --git a/vignettes/example-figure.Rmd b/vignettes/example-figure.Rmd
@@ -73,7 +73,7 @@ filename %>%
 Features of page and figure can be set up in `rtf_page` and `rtf_figure` respectively: 
 
 * Page orientation: `orientation` argument in `rtf_page`. 
-* Figure height and width: `fig_heigth` and `fig_width` arguments in `rtf_figure`.
+* Figure height and width: `fig_height` and `fig_width` arguments in `rtf_figure`.
 
 The figure height and width can be set up for each figure in a vector. 
 The code below provides an example for these features.

diff --git a/vignettes/r2rtf.Rmd b/vignettes/r2rtf.Rmd
@@ -433,7 +433,7 @@ LaTeX command `'\\leq'` to generate special character $\leq$.
 
 LaTeX commands can be used for Greek letters and math symbol such as $\alpha$, $\pm$, $\infty$.
 You will need to use double backslash `\\` to escape backslash in R. i.e. `"\\alpha"`, `"\\pm"` and `"\\infty"`.
-A list of LaTex commands can be found [here](https://www.overleaf.com/learn/latex/List_of_Greek_letters_and_math_symbols).
+A list of LaTeX commands can be found [here](https://www.overleaf.com/learn/latex/List_of_Greek_letters_and_math_symbols).
 
 Example below demonstrates this idea.
 

diff --git a/vignettes/rtf-convert-format.Rmd b/vignettes/rtf-convert-format.Rmd
@@ -23,9 +23,9 @@ r2rtf:::rtf_convert_format(
 ## Overview
 
 `r2rtf` had an experimental internal function `r2rtf:::rtf_convert_format` to 
-convert RTF format to PDF, DOCX or HTML. 
-This feature requires [libreoffice7.1](https://www.libreoffice.org/download/download/) and only 
-be tested in a Linux environment. 
+convert RTF format to PDF, DOCX, or HTML. 
+This feature requires LibreOffice >= 7.1 and was only 
+tested in a Linux environment. 
 
 By default, `r2rtf:::rtf_convert_format` convert RTF file to PDF format.
 The PDF file will be saved in the same folder with same file name by default.

diff --git a/vignettes/rtf-row.Rmd b/vignettes/rtf-row.Rmd
@@ -83,7 +83,7 @@ rtf_db %>%
 knitr::include_graphics("pdf/border-example.pdf")
 ```
 
-* The first and last border of the whole table is controled by `border_first` and `border_last` argument in `rtf_page()`  
+* The first and last border of the whole table is controlled by `border_first` and `border_last` argument in `rtf_page()`  
 
 ```{r}
 attr(rtf_db, "page")$border_first
@@ -93,7 +93,7 @@ attr(rtf_db, "page")$border_first
 attr(rtf_db, "border_first")
 ```
 
-For other border, it is controled by a matrix. 
+For other border, it is controlled by a matrix. 
 
 ```{r}
 rtf_db %>% attr("border_top")