CI: updated list of outputs and uncommented difference checks

Medical-Image-Analysis-Laboratory · Nov 4, 2020 · dcfdc48 · dcfdc48
1 parent aef9b6b
commit dcfdc48
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Showing 4 changed files with 486 additions and 484 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -158,8 +158,8 @@ jobs:
           command: |
             # Get all files in derivatives except the _*.json interface hash generated by nipype (find) / remove the full path of the derivatives (sed) / sort the files and write it to a text file
             sudo find /tmp/src/mialsuperresolutiontoolkit/data/derivatives -path */figures -prune -o -not -name "_*.json" -type f -print | sed s+/tmp/src/mialsuperresolutiontoolkit/data/derivatives/++ | sort > /tmp/src/mialsuperresolutiontoolkit/data/test/test-01_outputs.out
-            # diff /home/circleci/src/mialsuperresolutiontoolkit/.circleci/test-01_outputs.txt /tmp/src/mialsuperresolutiontoolkit/data/test/test-01_outputs.out         
-            # exit $?
+            diff /home/circleci/src/mialsuperresolutiontoolkit/.circleci/test-01_outputs.txt /tmp/src/mialsuperresolutiontoolkit/data/test/test-01_outputs.out         
+            exit $?
       - run:
           name: Test-02 - Run super-resolution pipelines on sample testing dataset with automatic brain extraction
           no_output_timeout: 6h
@@ -171,6 +171,8 @@ jobs:
             ls -la  /tmp/src/mialsuperresolutiontoolkit/data/code
             ls -la  /tmp/src/mialsuperresolutiontoolkit/data/derivatives
 
+            rm -R /tmp/src/mialsuperresolutiontoolkit/data/derivatives/*
+
             #Execute BIDS App
             docker run -it --rm --entrypoint /app/run_srr_coverage.sh \
                 -v /tmp/src/mialsuperresolutiontoolkit/data:/bids_dir \
@@ -189,8 +191,8 @@ jobs:
           command: |
             # Get all files in derivatives except the _*.json interface hash generated by nipype (find) / remove the full path of the derivatives (sed) / sort the files and write it to a text file
             sudo find /tmp/src/mialsuperresolutiontoolkit/data/derivatives -path */figures -prune -o -not -name "_*.json" -type f -print | sed s+/tmp/src/mialsuperresolutiontoolkit/data/derivatives/++ | sort > /tmp/src/mialsuperresolutiontoolkit/data/test/test-02_outputs.out
-            # diff /home/circleci/src/mialsuperresolutiontoolkit/.circleci/test-02_outputs.txt /tmp/src/mialsuperresolutiontoolkit/data/test/test-02_outputs.out         
-            # exit $?
+            diff /home/circleci/src/mialsuperresolutiontoolkit/.circleci/test-02_outputs.txt /tmp/src/mialsuperresolutiontoolkit/data/test/test-02_outputs.out         
+            exit $?
       - run:
           name: Clean working directory
           when: always