ENH: add new parser input flag '--manual'

Medical-Image-Analysis-Laboratory · Jun 29, 2020 · 45d9f98 · 45d9f98
1 parent 1e4a897
commit 45d9f98
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/pymialsrtk/parser.py b/pymialsrtk/parser.py
@@ -30,6 +30,9 @@ def get_parser():
     p.add_argument('--param_file', help='Path to a JSON file containing subjects\' exams ' 
                        'information and super-resolution total variation parameters.', 
                        default='/bids_dir/code/participants_param.json', type=str)
+    p.add_argument('--manual', help='Use manual brain masks found in '
+                                    '<output_dir>/manual_masks/ directory',
+                               action='store_true')
     p.add_argument('-v', '--version', action='version',
                         version='BIDS-App MIALSRTK version {}'.format(__version__))
     return p