Set SGE env explicitly so login shell not required

Matgenix · Oct 11, 2024 · e3cd1a3 · e3cd1a3
1 parent 05acc12
commit e3cd1a3
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/tests/integration/dockerfiles/Dockerfile b/tests/integration/dockerfiles/Dockerfile
@@ -104,6 +104,11 @@ COPY ./tests/integration/dockerfiles/sge_startup.sh /etc/startup.sh
 RUN ln -s /opt/sge/bin/lx-amd64/qstat /usr/bin/qstat && \
     ln -s /opt/sge/bin/lx-amd64/qsub /usr/bin/qsub
 
+# Echo the SGE environment variables to the default /etc/profile
+RUN echo "export SGE_ROOT=/opt/sge" >> /etc/profile && \
+    echo "export SGE_CLUSTER_NAME=p6444" >> /etc/profile && \
+    echo "export SGE_CELL=default" >> /etc/profile
+
 #HEALTHCHECK CMD qstat -f || exit 1
 
 # 2) Add common options from ubuntu server

diff --git a/tests/integration/dockerfiles/sge_startup.sh b/tests/integration/dockerfiles/sge_startup.sh
@@ -106,6 +106,3 @@ SCRIPT
 if [[ ${sudo_cmd} ]]; then
     sudo -k
 fi
-
-# Load the relevant SGE environment on shell startup
-echo "source /opt/sge/default/common/settings.sh" >> /home/jobflow/.bashrc