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MLKaufman/README.md

Hi there 👋

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  1. rna-seq-star-deseq2 rna-seq-star-deseq2 Public

    bulk RNAseq workflow using Snakemake

    Python 1

  2. fastq-barcode-check fastq-barcode-check Public

    Rust code to check FASTQ reads for the presence of barcode sequences.

    1

  3. fuzzy-fastq fuzzy-fastq Public

    A bioinformatics script for matching DNA sequences with predefined barcodes and adapters using a mismatch threshold, then visualizing the distribution of matches in FASTQ files.

    Python 1

  4. activitytesting-suite activitytesting-suite Public

    Series of python programs for the analysis of rodent behavior.

    Python

  5. tfbs_annotate tfbs_annotate Public

    scripts to annotate transcription factor binding site analysis from: http://cisbp.ccbr.utoronto.ca/TFTools.php and http://jaspar.genereg.net/

    Python

  6. gene_annotate gene_annotate Public

    Tool to annotate csv or tsv files containing a column of gene symbols. Outputs formal gene name and protein function/class to table.

    Python

87 contributions in the last year

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Activity overview

Contributed to MLKaufman/addgene-stats, rnabioco/gene_model_plot, MLKaufman/thap1-rnaseq and 3 other repositories
Loading A graph representing MLKaufman's contributions from March 17, 2024 to March 19, 2025. The contributions are 99% commits, 1% pull requests, 0% issues, 0% code review.

Contribution activity

March 2025

Created 1 commit in 1 repository
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