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Script used for the micro Co-activation pattern analysis

1- Data should be saved as describe below:

A. seedmask = A logical vector of number of voxels of whole brain included in the study where 1 indicates the voxel within the initial seed - bilateral thalami in case of test data -(Dimension : nVox x 1)

B. TC = Compatible with the work of Bolton.T.W et al 2019. A cell sturcture of timecourses (Dimension: 1 x nParticipants) which each cell contains a matri of preprocessed BOLD time-course for whole brain (Dimension : lenght_of_timecourse x nVox)

C. FD = Compatible with the work of Bolton.T.W et al 2019.A matrix of

2- The scripts should be run after modification of mCAP_input to this order: 1.mCAP_input (You need to have spm12 and TbCAP toolbox installed) 2.mCAP_initialize 3.mCAP_main

3- Prerequisite: SPM12 TbCAPs toolbox

Copyright 2023 Farnaz Delavari

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

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