extend logging #18
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| name: Java CI with Maven | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| cache: maven | |
| - name: Install protoc | |
| run: sudo apt-get install -qq protobuf-compiler | |
| - name: Create protoc-3 symlink | |
| run: sudo ln -s /usr/bin/protoc /usr/bin/protoc-3 | |
| - name: Setup mvn cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.m2/repository | |
| key: ${{ runner.os }}-mgx-cache | |
| - name: Build 'utilities' | |
| run: | | |
| git clone -b utilities_2_0 https://github.com/MGX-metagenomics/utilities.git | |
| cd utilities | |
| mvn clean install -DskipTests=true | |
| cd .. | |
| rm -rf utilities | |
| - name: Build 'gpms' | |
| run: | | |
| git clone -b GPMS_2_0 https://github.com/MGX-metagenomics/GPMS.git | |
| cd GPMS | |
| mvn clean install -DskipTests=true | |
| cd .. | |
| rm -rf GPMS | |
| - name: Build with Maven | |
| run: mvn -B package --file pom.xml |