Adding python library version numbers

[handwerkerd]

When we closed #747 I had made a comment that we might also want to log the version numbers of key modules used by tedana. This PR does that (plus identifies & corrects an omission from that PR)

Changes proposed in this pull request:

• dataset_description.json includes the version numbers for all libraries specified in project.toml
• utils.get_system_info is now utils.get_system_and_version_info. The previous line to get the python version was moved from tedana.py and ica_reclassify.py into this function and this function now compiles the version numbers for the other packages
• I wouldn't mind someone making sure I'm getting all the version numbers in a pythonic and not-too-inefficient way.
• In making the above changes, I noticed the tedana and ica_reclassify workflows saves the system information, but t2smap did not so I added that info to t2smap
• I also noticed that the method in the _main functions for getting the text of a command line input worked for an actual command line input, but not tedana_cli calls, which we were using in the tests. I think I fixed this is a way that won't break anything else.
  • This causes code coverage to drop since the CLI line that created garbled outputs is now skipped. Not sure how to directly call that line.
• Added library version info to tedana_report.html via edits to report_info_table_template.html and html_report.py

For future work (or edits to this PR). The three work flows all have a very similar block of text to specify and write derivative_metadata This could be it's own function. Also, BIDSVersion is hard-coded in all three. Given 1.5.0 is the only version we support, that's not a big deal, but, if we ever add an updated output option, we might want to make that a variable.

I was reminded to do this via nipreps/fmriprep#3196

[codecov]

Codecov Report

Attention: Patch coverage is 83.33333% with 6 lines in your changes missing coverage. Please review.

Project coverage is 89.44%. Comparing base (2525ba3) to head (f218092).
Report is 61 commits behind head on main.

Files with missing lines	Patch %	Lines
tedana/workflows/ica_reclassify.py	50.00%	1 Missing and 1 partial ⚠️
tedana/workflows/t2smap.py	85.71%	1 Missing and 1 partial ⚠️
tedana/workflows/tedana.py	50.00%	1 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1014      +/-   ##
==========================================
- Coverage   89.54%   89.44%   -0.10%     
==========================================
  Files          26       26              
  Lines        3395     3420      +25     
  Branches      619      624       +5     
==========================================
+ Hits         3040     3059      +19     
- Misses        207      210       +3     
- Partials      148      151       +3     

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[tsalo]

LGTM!

[eurunuela]

LGTM! Thank you Dan.