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Added link to jupyter notebook [skip ci]
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jdetle committed Jul 7, 2016
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4 changes: 2 additions & 2 deletions package/MDAnalysis/analysis/diffusionmap.py
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From here it can be difficult to interpret the data, and is left as a task
for the user. The `diffusion distance` between frames i and j is best
approximated by the euclidean distance between rows i and j of
self.diffusion_space. A Jupyter notebook providing an analysis of protein
opening and closing is provided [here](#TODO url to notebook)
self.diffusion_space. A Jupyter [notebook](https://github.com/jdetle/dimension_reduction/blob/master/diffusionMaps/Diffusion_Map_Analysis_of_ADK.ipynb)
providing an analysis of protein pening and closing has been provided.
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