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[WIP] Analysis#38

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lilyminium wants to merge 39 commits intomasterMDAnalysis/UserGuide:masterfrom distancesMDAnalysis/UserGuide:distancesCopy head branch name to clipboard

+386,973-11,640

Commits

Commits on Dec 28, 2019

• added rms

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  6773912

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• undid ignore notebooks

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  d05c657

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• added note boxes

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  31aed4d

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Commits on Jan 22, 2020

• added psa

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Commits on Jan 23, 2020

• added trajectory similarity

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  1f425d2

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• added rst

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  43d3a63

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• reduce menu level

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  aa5452f

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• updated hes

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Commits on Jan 27, 2020

• added more analysis

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  cc0f568

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• started rdf

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  b986abc

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• more rdf

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Commits on Jan 30, 2020

• added gifs

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Commits on Feb 6, 2020

• wrote script to execute and clean notebooks

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  9661bb2

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• reorganised notebooks

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  e60dc5f

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• fixed merge conflict

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Commits on Feb 7, 2020

• updated trajectories to html

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  286b07c

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• refresh transformations notebook

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  ced30dd

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• moved transformations back

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  2b73a88

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Commits on Feb 10, 2020

• updated rmsf to use equilibrium data

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  dcd4316

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• updated dependencies

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  e8627ec

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• added hole

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Commits on Feb 17, 2020

• updated hole

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Commits on Feb 19, 2020

• updated hole2, added density_analysis, started blurb on diffusionmap

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  1888f12

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• switched trajectory transformation order

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  893ebe1

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• saved density nglview

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  c7e838c

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• Merge branch 'master' into distances

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  fd9596d

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Commits on Feb 20, 2020

• fixed hole link

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  dbcbdc9

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• Merge branch 'distances' of github.com:MDAnalysis/UserGuide into distances

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  ad26988

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Commits on Feb 22, 2020

• started dmap

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  a434db7

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• added dmap entry

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  1b1d66f

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• saved widget state

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  90accb4

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• added plotly js to nbsphinx

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  975474a

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Commits on Feb 23, 2020

• fixed notebook typos

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  89ca0f3

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Commits on Feb 29, 2020

• updated hole nb

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  701bfa8

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• updated pore gif

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  91a2120

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• updated pairwise tutorial

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Commits on Mar 10, 2020

• added dssp

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Commits on Mar 13, 2020

• added helanal

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• added helanal images

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