Formats

Input

Other than fasta files, DBGWAS recquires a strains file. This file contains the links between the sequencing files, their phenotype and their localisation. It is structured in 3 columns:

• ID
• Pheno
• Path

ID can be the name of the file without the extension for example. Pheno is either discrete (0 or 1) or continuous (floats from 0 to 1). Path is the absolute path to each file. You can obtain it by using the command readlink -f.

Ouptut

The output of DBGWAS is an interactive html page. To access it, go to your output folder named after your choice when starting DBGWAS and find the setp3 folder. Within that folder, you will find a .htmlfile. Double click on it. It will open in your default browser. The Home shows the sequences associated with the phenotype, ordered by increasing q-value (corrected p-value). To Get a closer look, click on one of them. It will open the page specific to that sequence.

Example:

A more detailed example, the original data of DBGWAS's publication: link