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Louis-Mael Gueguen edited this page Dec 4, 2024
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Welcome to the META-DIFF wiki!
Learn a bit more about each step, and get more information about the files required.
- Step 1: 1. Obtaining kmers in differential abundance with Kmdiff
- Step 2: 2. Building unitigs with Bcalm2
- Step 3: 3. Taxonomic assignment with Kraken2
- Step 4: 4. Functional annotation with Prodigal and MicrobeAnnotator
- Step 5: 5. P-value aggregation for feature pre-selection
- Step 6: 6. Abundance matrix
- Step 7: 7. Sumup table
- Step 8: 8. Machine-learning
- Step 9: 9. Neptune
- Additional info: Required files format