Merge pull request #80 from LinkedEarth/corr_updates #3

	name: Sync JupyterBook
	on:
	push:
	branches: [ main ]
	workflow_dispatch:

	jobs:
	sync-jupyterbook:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: pyleo
	environment-file: environment.yml
	auto-activate-base: false
	- name: Install dependencies
	run: \|
	conda activate pyleo
	pip install pyyaml
	- name: Configure Git
	run: \|
	git config --global user.name 'github-actions[bot]'
	git config --global user.email 'github-actions[bot]@users.noreply.github.com'
	- name: Copy Files and Update TOC
	run: \|
	git checkout jupyterbook
	rm -rf notebooks/ data/
	git checkout main -- notebooks/ data/

	cat << 'EOF' > update_toc.py
	import yaml
	import glob
	import os

	toc = {
	'format': 'jb-book',
	'root': 'intro.md',
	'parts': [
	{
	'caption': 'Getting Started',
	'chapters': []
	},
	{
	'caption': 'Manipulating Data and Graphics',
	'chapters': []
	},
	{
	'caption': 'Data Analysis with Pyleoclim',
	'chapters': []
	}
	]
	}

	notebooks = glob.glob('notebooks/L[0-2]*.ipynb')
	notebooks.sort()

	level_map = {'L0': 0, 'L1': 1, 'L2': 2}

	for nb in notebooks:
	level = os.path.basename(nb)[:2]
	if level in level_map:
	part_index = level_map[level]
	toc['parts'][part_index]['chapters'].append({'file': nb})

	with open('_toc.yml', 'w') as f:
	yaml.dump(toc, f, sort_keys=False)
	EOF

	conda activate pyleo
	python update_toc.py

	git add notebooks/ data/ _toc.yml
	if ! git diff --staged --quiet; then
	git commit -m "Auto-sync notebooks, data, and update TOC"
	git push origin jupyterbook
	fi

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