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1. LinearFold LinearFold Public

   The new source code of the LinearFold, linear-time prediction for RNA secondary structures

   C++ 149 49

2. LinearPartition LinearPartition Public

   Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities

   C++ 28 18

3. LinearTurboFold LinearTurboFold Public

   An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs

   C++ 11 5

4. LinearSampling LinearSampling Public

   Improved and linear-time stochastic sampling algorithm for RNA secondary structures

   C++ 9 2

5. LinearSankoff LinearSankoff Public

   Linear-time Simultaneous Folding and Alignment of RNA Homologs

   C++ 4

6. LinearAlifold LinearAlifold Public

   LinearAlifold

   C 3 1