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LieberInstitute · May 15, 2019 · 8087848 · 8087848
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diff --git a/cross_studies_metadata/cross_studies_metadata.Rmd b/cross_studies_metadata/cross_studies_metadata.Rmd
@@ -10,7 +10,7 @@ author:
     affiliation:
     - &libd Lieber Institute for Brain Development, Johns Hopkins Medical Campus
     - &ccb Center for Computational Biology, Johns Hopkins University
-    email: leo.collado@libd.org
+    email: lcolladotor@gmail.com
   - name: Michael D Wilson
     affiliation:
     - *ggb

diff --git a/cross_studies_metadata/cross_studies_metadata.html b/cross_studies_metadata/cross_studies_metadata.html
@@ -232,7 +232,7 @@
 <h1 class="title toc-ignore">Merging recount_brain metadata with GTEx and TCGA metadata</h1>
 <p class="author-name">Dustin Sokolowski<span class="affil-mark">1,2*</span>, Leonardo Collado-Torres<span class="affil-mark">3,4**</span> and Michael D Wilson<span class="affil-mark">1,2,5</span></p>
 <p class="author-affiliation"><span class="affil-mark">1</span>Program in Genetics and Genome Biology, Hospital for Sick Children, Toronto M5G 0A4, Canada<br><span class="affil-mark">2</span>Department of Molecular Genetics, University of Toronto, Toronto M5S 1A8, Canada<br><span class="affil-mark">3</span>Lieber Institute for Brain Development, Johns Hopkins Medical Campus<br><span class="affil-mark">4</span>Center for Computational Biology, Johns Hopkins University<br><span class="affil-mark">5</span>Heart and Stroke Richard Lewar Centre of Excellence in Cardiovascular Research, Toronto M5S 3H2, Canada</p>
-<p class="author-email"><span class="affil-mark">*</span><a href="mailto:djsokolowski95@gmail.com">djsokolowski95@gmail.com</a><br><span class="affil-mark">**</span><a href="mailto:leo.collado@libd.org">leo.collado@libd.org</a></p>
+<p class="author-email"><span class="affil-mark">*</span><a href="mailto:djsokolowski95@gmail.com">djsokolowski95@gmail.com</a><br><span class="affil-mark">**</span><a href="mailto:lcolladotor@gmail.com">lcolladotor@gmail.com</a></p>
 <h4 class="date"><em>28 July 2018</em></h4>
 
 </div>

diff --git a/cross_studies_metadata/recount_brain_ontologies.Rmd b/cross_studies_metadata/recount_brain_ontologies.Rmd
@@ -9,7 +9,7 @@ author:
     affiliation:
     - &libd Lieber Institute for Brain Development, Johns Hopkins Medical Campus
     - &ccb Center for Computational Biology, Johns Hopkins University
-    email: leo.collado@libd.org
+    email: lcolladotor@gmail.com
 output: 
   BiocStyle::html_document:
     self_contained: yes

diff --git a/cross_studies_metadata/recount_brain_ontologies.html b/cross_studies_metadata/recount_brain_ontologies.html
@@ -301,7 +301,7 @@
 <h1 class="title toc-ignore">Ontology-based metadata for recount-brain</h1>
 <p class="author-name">Sean Davis<span class="affil-mark">1*</span> and Leonardo Collado-Torres<span class="affil-mark">2,3**</span></p>
 <p class="author-affiliation"><span class="affil-mark">1</span>Genetics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, 20892, USA<br><span class="affil-mark">2</span>Lieber Institute for Brain Development, Johns Hopkins Medical Campus<br><span class="affil-mark">3</span>Center for Computational Biology, Johns Hopkins University</p>
-<p class="author-email"><span class="affil-mark">*</span><a href="mailto:sdavis2@mail.nih.gov">sdavis2@mail.nih.gov</a><br><span class="affil-mark">**</span><a href="mailto:leo.collado@libd.org">leo.collado@libd.org</a></p>
+<p class="author-email"><span class="affil-mark">*</span><a href="mailto:sdavis2@mail.nih.gov">sdavis2@mail.nih.gov</a><br><span class="affil-mark">**</span><a href="mailto:lcolladotor@gmail.com">lcolladotor@gmail.com</a></p>
 <h4 class="date">15 April 2019</h4>
 
 </div>

diff --git a/example_PMI/example_PMI.Rmd b/example_PMI/example_PMI.Rmd
@@ -5,7 +5,7 @@ author:
   affiliation:
   - Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
   - Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA
-  email: leo.collado@libd.org
+  email: lcolladotor@gmail.com
 output:
   BiocStyle::html_document
 abstract: |

diff --git a/example_PMI/example_PMI.html b/example_PMI/example_PMI.html
@@ -126,7 +126,7 @@
 <h1 class="title toc-ignore">Using recount_brain to explore relationships with post-mortem interval</h1>
 <p class="author-name">Leonardo Collado-Torres<span class="affil-mark">1,2*</span></p>
 <p class="author-affiliation"><span class="affil-mark">1</span>Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA<br><span class="affil-mark">2</span>Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA</p>
-<p class="author-email"><span class="affil-mark">*</span><a href="mailto:leo.collado@libd.org">leo.collado@libd.org</a></p>
+<p class="author-email"><span class="affil-mark">*</span><a href="mailto:lcolladotor@gmail.com">lcolladotor@gmail.com</a></p>
 <h4 class="date"><em>3 March 2018</em></h4>
 <h4 class="abstract">Abstract</h4>
 <p>This is an example of how you can use recount_brain to check if some results from another study are replicated in brain samples from the SRA present in recount2. This example also shows how you can quantify the percent of mitochondrial transcription and options for comparing two sets of SRA studies.</p>

diff --git a/example_SRP027383/example_SRP027383.Rmd b/example_SRP027383/example_SRP027383.Rmd
@@ -5,7 +5,7 @@ author:
   affiliation:
   - Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA
   - Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA
-  email: leo.collado@libd.org
+  email: lcolladotor@gmail.com
 output:
   BiocStyle::html_document
 abstract: |

diff --git a/example_SRP027383/example_SRP027383.html b/example_SRP027383/example_SRP027383.html
@@ -126,7 +126,7 @@
 <h1 class="title toc-ignore">recount_brain example with data from SRP027383</h1>
 <p class="author-name">Leonardo Collado-Torres<span class="affil-mark">1,2*</span></p>
 <p class="author-affiliation"><span class="affil-mark">1</span>Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA<br><span class="affil-mark">2</span>Center for Computational Biology, Johns Hopkins University, Baltimore, MD, 21205, USA</p>
-<p class="author-email"><span class="affil-mark">*</span><a href="mailto:leo.collado@libd.org">leo.collado@libd.org</a></p>
+<p class="author-email"><span class="affil-mark">*</span><a href="mailto:lcolladotor@gmail.com">lcolladotor@gmail.com</a></p>
 <h4 class="date"><em>3 March 2018</em></h4>
 <h4 class="abstract">Abstract</h4>
 <p>This is an example on how to use recount_brain applied to the SRP027383 study. We show how to download data from recount2, add the sample metadata from recount_brain, explore the sample metadata and the gene expression data, and perform a gene expression analysis.</p>

diff --git a/merged_metadata/merging_data.Rmd b/merged_metadata/merging_data.Rmd
@@ -5,7 +5,7 @@ author:
     affiliation:
     - &libd Lieber Institute for Brain Development, Johns Hopkins Medical Campus
     - &ccb Center for Computational Biology, Johns Hopkins University
-    email: leo.collado@libd.org
+    email: lcolladotor@gmail.com
   - name: Ashkaun Razmara
     affiliation:
     - *libd

diff --git a/merged_metadata/merging_data.html b/merged_metadata/merging_data.html
@@ -232,7 +232,7 @@
 <h1 class="title toc-ignore">Merging metadata and recount_brain</h1>
 <p class="author-name">Leonardo Collado-Torres<span class="affil-mark">1,2*</span> and Ashkaun Razmara<span class="affil-mark">1</span></p>
 <p class="author-affiliation"><span class="affil-mark">1</span>Lieber Institute for Brain Development, Johns Hopkins Medical Campus<br><span class="affil-mark">2</span>Center for Computational Biology, Johns Hopkins University</p>
-<p class="author-email"><span class="affil-mark">*</span><a href="mailto:leo.collado@libd.org">leo.collado@libd.org</a></p>
+<p class="author-email"><span class="affil-mark">*</span><a href="mailto:lcolladotor@gmail.com">lcolladotor@gmail.com</a></p>
 <h4 class="date"><em>12 July 2018</em></h4>
 
 </div>

diff --git a/metasra_comp/metasra_comp.Rmd b/metasra_comp/metasra_comp.Rmd
@@ -5,7 +5,7 @@ author:
     affiliation:
     - &libd Lieber Institute for Brain Development, Johns Hopkins Medical Campus
     - &ccb Center for Computational Biology, Johns Hopkins University
-    email: leo.collado@libd.org
+    email: lcolladotor@gmail.com
 output: 
   BiocStyle::html_document:
     self_contained: yes

diff --git a/metasra_comp/metasra_comp.html b/metasra_comp/metasra_comp.html
@@ -301,7 +301,7 @@
 <h1 class="title toc-ignore">Comparing recount-brain and MetaSRA ‘UBERON:0000955’</h1>
 <p class="author-name">Leonardo Collado-Torres<span class="affil-mark">1,2*</span></p>
 <p class="author-affiliation"><span class="affil-mark">1</span>Lieber Institute for Brain Development, Johns Hopkins Medical Campus<br><span class="affil-mark">2</span>Center for Computational Biology, Johns Hopkins University</p>
-<p class="author-email"><span class="affil-mark">*</span><a href="mailto:leo.collado@libd.org">leo.collado@libd.org</a></p>
+<p class="author-email"><span class="affil-mark">*</span><a href="mailto:lcolladotor@gmail.com">lcolladotor@gmail.com</a></p>
 <h4 class="date">16 April 2019</h4>
 
 </div>